Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq1375 127 4e-27 seq16 127 4e-27 seq4 127 4e-27 seq1374 111 3e-22 seq9 104 5e-20 seq18 102 2e-19 seq2 77.0 7e-12 >seq1375 Length=152860 Score = 127 bits (140), Expect = 4e-27 Identities = 195/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 100304 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 100256 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| || |||||||||| | | |||||| ||||| ||| ||||| Sbjct 100255 GC------TTCTTCTCTGGGAAAAGAAGTTCAGGACCCGTAGG-CCTTCTACCTCCACGC 100203 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 100202 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 100143 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 100142 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 100083 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 100082 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 100044 Score = 127 bits (140), Expect = 4e-27 Identities = 195/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 135587 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 135635 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| || |||||||||| | | |||||| ||||| ||| ||||| Sbjct 135636 GC------TTCTTCTCTGGGAAAAGAAGTTCAGGACCCGTAGG-CCTTCTACCTCCACGC 135688 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 135689 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 135748 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 135749 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 135808 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 135809 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 135847 >seq16 Length=39632211 Score = 127 bits (140), Expect = 4e-27 Identities = 195/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 8765762 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 8765810 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| || |||||||||| | | |||||| ||||| ||| ||||| Sbjct 8765811 GC------TTCTTCTCTGGGAAAAGAAGTTCAGGACCCGTAGG-CCTTCTACCTCCACGC 8765863 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 8765864 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 8765923 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 8765924 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 8765983 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 8765984 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 8766022 Score = 73.4 bits (80), Expect = 8e-11 Identities = 68/85 (80%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 127 GCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTT 186 ||||| |||| || ||||||||| |||| |||||||||||||||| | || ||||| Sbjct 28912999 GCTGGATCAGGCTTGCGTCCATTGTCCAAGATTCCTCACTGCTGCC-ACTGTGGGAGTCC 28913057 Query 187 GGACCGTGTCTCAGTTCCAATGTGG 211 || | |||||||||| || ||||| Sbjct 28913058 GGGCTGTGTCTCAGTCCCGGTGTGG 28913082 >seq4 Length=41855496 Score = 127 bits (140), Expect = 4e-27 Identities = 195/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 22275124 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 22275076 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| || |||||||||| | | |||||| ||||| ||| ||||| Sbjct 22275075 GC------TTCTTCTCTGGGAAAAGAAGTTCAGGACCCGTAGG-CCTTCTACCTCCACGC 22275023 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 22275022 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 22274963 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 22274962 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 22274903 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 22274902 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 22274864 Score = 127 bits (140), Expect = 4e-27 Identities = 195/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 39509810 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 39509858 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| || |||||||||| | | |||||| ||||| ||| ||||| Sbjct 39509859 GC------TTCTTCTCTGGGAAAAGAAGTTCAGGACCCGTAGG-CCTTCTACCTCCACGC 39509911 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 39509912 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 39509971 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 39509972 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 39510031 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 39510032 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 39510070 >seq1374 Length=221853 Score = 111 bits (122), Expect = 3e-22 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| |||| || || |||||| |||| ||||| || Sbjct 71188 CCTTCTTCACTCACGCAATATTGCTGGATCAGGCTTGCGCCCATTGTCCAAGATTCCCCA 71247 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| || ||||| || | ||| Sbjct 71248 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCGGTGTGGCTGATCGTCCGAA 71307 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| || Sbjct 71308 AAGACCAGCTAAGCATCATCGGCTTGGTCAGCCTTTACCTAACCAACTACCTAATACTAC 71367 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 71368 GCAGGCTCATCAAACAGCG 71386 >seq9 Length=46179939 Score = 104 bits (114), Expect = 5e-20 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || ||| |||||| || ||||| |||||||||||||||||||||| ||| ||| Sbjct 9430152 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 9430211 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGT 252 ||||||||| ||| ||||| || | ||||||| || | ||| ||| | | || ||| Sbjct 9430212 TGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGT 9430271 Query 253 GGGCCGTTACCCCGCCTACTACCTAAT 279 || || || | || |||| ||||| Sbjct 9430272 AAGCTATTGCCTCACCAACTAGCTAAT 9430298 >seq18 Length=36757632 Score = 102 bits (112), Expect = 2e-19 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| |||| || || |||||| |||| ||||| || Sbjct 29744166 CCTTCTTCACTCACGCAATATTGCTGGATCAGGCTTGCGCCCATTGTCCAAGATTCCCCA 29744225 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| || ||||| || | ||| Sbjct 29744226 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCGGTGTGGCTGATCGTCCGAA 29744285 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| | ||| || ||||| |||| || Sbjct 29744286 AAGACCAGCTAAGCATCATCGGCTTGGTCAGCCTTGACCTAACCAACTACTTAATACTAC 29744345 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 29744346 GCAGGCTCATCAAACAGCG 29744364 >seq2 Length=31488241 Score = 77.0 bits (84), Expect = 7e-12 Identities = 57/67 (85%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 135 AGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTG 194 || || ||| |||||| | || ||||| |||||||||||| ||||||||| ||| ||||| Sbjct 28776102 AGGCTTTCGCCCATTGCCGAAAATTCCCCACTGCTGCCTCTCGTAGGAGTATGGGCCGTG 28776161 Query 195 TCTCAGT 201 ||||||| Sbjct 28776162 TCTCAGT 28776168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068785293312