Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6 190 2e-43 seq11 167 2e-36 seq2 161 8e-35 seq13 152 4e-32 >seq6 Length=47127078 Score = 190 bits (210), Expect = 2e-43 Identities = 577/875 (66%), Gaps = 20/875 (2%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| | || | | || ||| |||||||| ||||| || || || |||| Sbjct 44871840 TGTTCCCGATCCACTACCCGCAGATCTGGGAGATGTACAAGAAGGCCGAGGCCTCTTTCT 44871899 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTT-ATCGAGC 61182 |||| | || || |||||| | || |||||| ||||||||| | | | ||| | Sbjct 44871900 GGACCGCCGAAGAAGTCGATCTCTCGCAAGACACTCGCGACTGGGAGAATCTCAACGA-C 44871958 Query 61183 GGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTC 61242 || || | || ||||| ||||| || | || ||||| ||||| || ||||| ||||| Sbjct 44871959 GGAGAGCGCCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTT 44872018 Query 61243 AATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 |||||| | || ||| | || |||||||| || ||||||||| ||| Sbjct 44872019 TTGGAGAATCTCGCCTCCCGGTTCATGTCCGACGTGCAAGTCTCCGAGGCGCGTGCCTTC 44872078 Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362 ||||| |||||||| || || |||||| ||||||| ||||||||||| | || |||| Sbjct 44872079 TACGGGTTCCAGATCGCGATTGAGAATATCCACTCAGAGATGTACAGCCTCCTGCTCGAC 44872138 Query 61363 ACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACC- 61421 |||||||||| ||| || | || | | ||| || || || || || || Sbjct 44872139 ACGTACATCAAGGATAACAAAGAGAGGGACCACCTCTTCCGCGCGATTGAAACCATCCCT 44872198 Query 61422 GGCG--GTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA 61479 ||| | ||| ||| || | |||||| | || |||||| | | | | || Sbjct 44872199 TGCGTCGCGAA---GAAGGCCCAATGGGCCATGAAGTGGATCGACGG---ATCTCAGACT 44872252 Query 61480 TTTGGTGA-ACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGG-ATCGT 61537 || | || | ||| | |||| ||||| || || || | || ||| || | | | Sbjct 44872253 TTCGCCGAGAGGATCG-TGGCGTTTGCTTGCGTGGAAGGGATCTTCTTCTCCGGTAGCTT 44872311 Query 61538 TTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG 61597 || | | ||||| ||| ||||||| || || || ||||| ||| | |||||| ||| | Sbjct 44872312 CTG-CTCGATCTTCTGGCTGAAGAAGCGAGGGCTCATGCCGGGTTTAACCTTCTCCAACG 44872370 Query 61598 AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCT 61657 ||||||| || || ||||| ||| | || || || || || || || | || || Sbjct 44872371 AGTTGATCTCTCGAGACGAAGGCCTTCACTGCGACTTCGCGTGCCTG--ATCTATACTCT 44872428 Query 61658 ATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTA 61717 || || || | |||||||||| ||| ||||||| | || ||||| | Sbjct 44872429 AT-TGAGGACGAAGCTCACGGAGGAGCGCGTGAAGTCGATTGTTTGCGACGCGGTGGAGA 44872487 Query 61718 TCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGAC 61777 |||| ||| ||| || ||||| | || | | | | || |||||| ||| | Sbjct 44872488 TCGAGAGGGAGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGGTGGGGATGAATCGTGATC 44872547 Query 61778 TAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAAG 61836 | ||| ||||||||||| ||||| || || | || |||| || ||||||| | | Sbjct 44872548 TGATGAGTCAGTATATTGAGTTTGTGGCGGATAGGCTTTTGGGCGCGCTTGGGTACG-GG 44872606 Query 61837 CGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAG 61896 | | || | | || || ||||||| ||||| |||||||||| | || || Sbjct 44872607 AAGGTGTACGGTGTGGCGAATCCGTTTGATTGGATGGAGTTGATTTCGCTTCAGGGGAAA 44872666 Query 61897 ACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||||| || |||||||| | || || || || || Sbjct 44872667 ACGAACTTCTTCGAGAAGAGAGTTGGGGATTACCA 44872701 >seq11 Length=45114658 Score = 167 bits (184), Expect = 2e-36 Identities = 392/580 (68%), Gaps = 15/580 (3%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| | || | | || ||| |||||||| ||||| ||||| || |||| Sbjct 34046975 TGTTCCCGATCCAATACCCGCAGATCTGGGAGATGTACAAGAAGGCCGAAGCCTCTTTCT 34047034 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTT-ATCGAGC 61182 |||| | || || ||||| | ||| |||||| ||||||||| | | | ||| | Sbjct 34047035 GGACCGCCGAAGAAGTCGACCTCTCCCAAGACAATCGCGACTGGGAGAATCTCAACGA-C 34047093 Query 61183 GGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTC 61242 || || | || ||||| ||||| || | || ||||| ||||| || ||||| ||||| Sbjct 34047094 GGAGAGCGCCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCAGACGGAATCGTT 34047153 Query 61243 AATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 |||||| | || ||| | || |||||||| || ||||||||| ||| Sbjct 34047154 TTGGAGAATCTCGCCTCGCGGTTCATGTCCGACGTGCAAGTCTCCGAGGCGCGTGCCTTC 34047213 Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362 ||||| |||||||| || || |||||| ||||||| ||||||||||| | || |||| Sbjct 34047214 TACGGGTTCCAGATCGCGATTGAGAATATCCACTCAGAGATGTACAGCCTCCTGCTCGAC 34047273 Query 61363 ACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACC- 61421 |||||||||| ||| ||| | || | | ||| || || ||||| || || Sbjct 34047274 ACGTACATCAAGGACAACAAGGAGAGGGACCACCTTTTCCGCGCGATTGAGACCATCCCT 34047333 Query 61422 GGCG--GTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA 61479 ||| | ||| ||| || | |||||| | | |||||| | | | | || Sbjct 34047334 TGCGTCGCGAA---GAAGGCCCAATGGGCCATGACGTGGATCGACGG---ATCTCAGACT 34047387 Query 61480 TTTGGTGA-ACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGG-ATCGT 61537 || | || | ||| | | || || || ||||| || | || ||| || | | | Sbjct 34047388 TTCGCCGAGAGGATCG-TCGCCTTCGCTTGCGTCGAAGGGATCTTCTTCTCCGGTAGCTT 34047446 Query 61538 TTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG 61597 || | | ||||| ||| | ||||| || || || ||||| || | |||||| ||| | Sbjct 34047447 CTG-CTCGATCTTCTGGCTTAAGAAGCGAGGGCTCATGCCTGGGTTAACCTTCTCCAACG 34047505 Query 61598 AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 ||||||| || || ||||| ||| |||| || ||||| || Sbjct 34047506 AGTTGATCTCTCGAGACGAAGGCTTGCACTGCGATTTCGC 34047545 >seq2 Length=31488241 Score = 161 bits (178), Expect = 8e-35 Identities = 571/878 (65%), Gaps = 23/878 (3%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| | || | | || ||| |||||||| || || ||||| ||||||| Sbjct 7377551 TGTTCCCGATCCACTACCCGCAGATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCT 7377492 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGT----TTATCG 61179 |||| | ||||| ||||| | ||| |||||| ||||||||| | | || Sbjct 7377491 GGACCGCCGAGGAAGTCGACCTCTCCCAAGACACCCGCGACTGGGAGACCAACCTCAACG 7377432 Query 61180 AGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATC 61239 | ||| || | || ||||| ||||| || | || ||||| ||||| || ||||| ||| Sbjct 7377431 A-CGGCGAGCGCCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATC 7377373 Query 61240 GTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGT 61299 ||| |||||| | || ||| | || ||||| || || ||||||||| Sbjct 7377372 GTCCTCGAGAATCTCGCCTCCCGGTTCATGTCCGACGTGCAGGTCTCCGAGGCGCGTGCC 7377313 Query 61300 TTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATC 61359 |||||||| |||||||| || || |||||| ||||||||||||||||||| | | | Sbjct 7377312 TTCTACGGGTTCCAGATCGCGATTGAGAATATCCACTCGGAGATGTACAGCCTCTTGCTA 7377253 Query 61360 GATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATA 61419 ||||||||||||| ||| ||| | || | | ||| || || ||||| || Sbjct 7377252 GATACGTACATCAAGGACAACAAGGAGAGGGACCATCTCTTCCGCGCGATTGAGACCATC 7377193 Query 61420 CC-GGCG--GTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCT 61476 || ||| | ||| ||| || | ||||| || || ||||| | | | | Sbjct 7377192 CCTTGCGTCGCGAA---GAAGGCCCAATGGGCTTTGAAGTGGAT---CGATGGATCTCAG 7377139 Query 61477 ACATTTGGTGA-ACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATC 61535 || || | || | ||| | |||| || ||| || || || | || ||| ||| Sbjct 7377138 ACTTTCGCCGAGAGGATCG-TGGCCTTCGCGTGCGTGGAAGGGATCTTCTTCTCCGGAAG 7377080 Query 61536 GTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAA 61595 || | | ||||| ||| | ||||| || || || ||||| || || |||||| ||| Sbjct 7377079 CTTCTGCTCCATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCGGGGCTCACCTTCTCCAA 7377020 Query 61596 TGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACG 61655 ||| |||| || || ||||| ||| | || || || || || | || || | Sbjct 7377019 CGAGCTGATCTCGCGGGACGAAGGCCTTCACTGCGACTTCGC---GTGCCTGATCTATAC 7376963 Query 61656 CTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAAC 61715 || || || | ||||||||||| ||| ||| || | || ||||| Sbjct 7376962 CTTGTTGAGGACGAAGCTATCGGAGGAGCGCGTGAAGTCGATCGTGTGCGACGCGGTGGA 7376903 Query 61716 TATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGG 61775 ||||| ||| ||| || ||||| | ||| | | | | || ||||| | || Sbjct 7376902 GATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCCTGCGCGTTGGTGGGGATGAACCG-GG 7376844 Query 61776 AC-TAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTT-GGTCGATTTGGGTATG 61833 || | ||| ||||||||||| ||||| || || | || || ||| ||||||| | Sbjct 7376843 ACTTGATGAGTCAGTATATTGAGTTTGTGGCGGATAGGCTTTTGGGTGCGCTTGGGTACG 7376784 Query 61834 AAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGC 61893 | | | || | | || || ||||||| ||||| |||| ||||| | || Sbjct 7376783 -GGAAGGTGTACGGTGTGGCGAATCCGTTTGATTGGATGGAGTTGATCTCGCTTCAGGGT 7376725 Query 61894 AAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 || |||||||| |||||||| | || || || || || Sbjct 7376724 AAAACGAATTTCTTCGAGAAGAGGGTTGGTGATTACCA 7376687 Score = 161 bits (178), Expect = 8e-35 Identities = 571/878 (65%), Gaps = 23/878 (3%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| | || | | || ||| |||||||| || || ||||| ||||||| Sbjct 27065885 TGTTCCCGATCCACTACCCGCAGATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCT 27065944 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGT----TTATCG 61179 |||| | ||||| ||||| | ||| |||||| ||||||||| | | || Sbjct 27065945 GGACCGCCGAGGAAGTCGACCTCTCCCAAGACACCCGCGACTGGGAGAACAACCTCAACG 27066004 Query 61180 AGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATC 61239 | ||| || | || ||||| ||||| || | || ||||| ||||| || ||||| ||| Sbjct 27066005 A-CGGCGAGCGCCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATC 27066063 Query 61240 GTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGT 61299 ||| |||||| | || ||| | || ||||| || || ||||||||| Sbjct 27066064 GTCCTCGAGAATCTCGCCTCCCGGTTCATGTCCGACGTGCAGGTCTCCGAGGCGCGTGCC 27066123 Query 61300 TTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATC 61359 |||||||| |||||||| || || |||||| ||||||||||||||||||| | | | Sbjct 27066124 TTCTACGGGTTCCAGATCGCGATTGAGAATATCCACTCGGAGATGTACAGCCTCTTGCTA 27066183 Query 61360 GATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATA 61419 ||||||||||||| ||| ||| | || | | ||| || || ||||| || Sbjct 27066184 GATACGTACATCAAGGACAACAAGGAGAGGGACCATCTCTTCCGCGCGATTGAGACCATC 27066243 Query 61420 CC-GGCG--GTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCT 61476 || ||| | ||| ||| || | ||||| || || ||||| | | | | Sbjct 27066244 CCTTGCGTCGCGAA---GAAGGCCCAATGGGCTTTGAAGTGGAT---CGATGGATCTCAG 27066297 Query 61477 ACATTTGGTGA-ACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATC 61535 || || | || | ||| | |||| || ||| || || || | || ||| ||| Sbjct 27066298 ACTTTCGCCGAGAGGATCG-TGGCCTTCGCGTGCGTGGAAGGGATCTTCTTCTCCGGAAG 27066356 Query 61536 GTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAA 61595 || | | ||||| ||| | ||||| || || || ||||| || || |||||| ||| Sbjct 27066357 CTTCTGCTCCATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCGGGGCTCACCTTCTCCAA 27066416 Query 61596 TGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACG 61655 ||| |||| || || ||||| ||| | || || || || || | || || | Sbjct 27066417 CGAGCTGATCTCGCGGGACGAAGGCCTTCACTGCGACTTCGC---GTGCCTGATCTATAC 27066473 Query 61656 CTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAAC 61715 || || || | ||||||||||| ||| ||| || | || ||||| Sbjct 27066474 CTTGTTGAGGACGAAGCTATCGGAGGAGCGCGTGAAGTCGATCGTGTGCGACGCGGTGGA 27066533 Query 61716 TATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGG 61775 ||||| ||| ||| || ||||| | ||| | | | | || ||||| | || Sbjct 27066534 GATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCCTGCGCGTTGGTGGGGATGAACCG-GG 27066592 Query 61776 AC-TAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTT-GGTCGATTTGGGTATG 61833 || | ||| ||||||||||| ||||| || || | || || ||| ||||||| | Sbjct 27066593 ACTTGATGAGTCAGTATATTGAGTTTGTGGCGGATAGGCTTTTGGGTGCGCTTGGGTACG 27066652 Query 61834 AAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGC 61893 | | | || | | || || ||||||| ||||| |||| ||||| | || Sbjct 27066653 -GGAAGGTGTACGGTGTGGCGAATCCGTTTGATTGGATGGAGTTGATCTCGCTTCAGGGT 27066711 Query 61894 AAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 || |||||||| |||||||| | || || || || || Sbjct 27066712 AAAACGAATTTCTTCGAGAAGAGGGTTGGTGATTACCA 27066749 >seq13 Length=54295181 Score = 152 bits (168), Expect = 4e-32 Identities = 225/317 (71%), Gaps = 5/317 (2%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| | || | | || ||| |||||||| || || ||||| ||||||| Sbjct 40048719 TGTTCCCAATCCACTACCCGCAGATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCT 40048660 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGT----TTATCG 61179 |||| | ||||| ||||| | ||| |||||| ||||||||| | | || Sbjct 40048659 GGACCGCCGAGGAAGTCGACCTCTCCCAAGACACCCGCGACTGGGAGAACAACCTCAACG 40048600 Query 61180 AGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATC 61239 | ||| || | || ||||| ||||| || | || ||||| ||||| || ||||| ||| Sbjct 40048599 A-CGGAGAGCGCCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATC 40048541 Query 61240 GTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGT 61299 ||| |||||| | || ||| | || ||||| || || |||||||| Sbjct 40048540 GTCCTCGAGAATCTCGCCACCCGGTTCATGTCCGACGTGCAGGTCTCCGAGGCGCGCGCC 40048481 Query 61300 TTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATC 61359 |||||||| |||||||| || || |||||| ||||||||||||||||||| | | | Sbjct 40048480 TTCTACGGGTTCCAGATCGCGATCGAGAATATCCACTCGGAGATGTACAGCCTCTTGTTA 40048421 Query 61360 GATACGTACATCAGGGA 61376 ||||||||||||| ||| Sbjct 40048420 GATACGTACATCAAGGA 40048404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397561332784640