Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq82 120 9e-23 >seq82 Length=657493 Score = 120 bits (132), Expect = 9e-23 Identities = 213/311 (68%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 2602 AAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAACACTGCTTACCTTGAAAAAGGT 2661 ||| ||||||| || || || || || ||||||||||| || | | ||||||| Sbjct 75990 AAAATTCAATTAGTAGGAGATGATTTATTCGTAACTAATACCAATATTTTAAAAAAAGGA 76049 Query 2662 ATTGCAGAACACGCTGCTAACTCAATCCTTATCAAAGTTAACCAAATCGGTACTTTGACT 2721 || | | || |||||| || || | |||||| | |||||||| ||||| || || Sbjct 76050 ATAGAAAAAGGTATTGCTAATTCTATATTGATCAAATTAAACCAAATTGGTACATTAACC 76109 Query 2722 GAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGATACACAGCAGTAGTATCACAC 2781 || ||| |||| || || ||||||| ||||||||| || | | || |||| || Sbjct 76110 GAGACTCTTGAAGCCATAAAAATGGCAAAAGAAGCTAATTATAGTGTTATAATATCTCAT 76169 Query 2782 CGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAACGCTGGT 2841 || ||||||||||| ||||| || | || || ||| | | || | ||| || || Sbjct 76170 CGATCAGGTGAAACAGAAGACGCATCTATAGCAGATTTATCTGTAGGAACATCAGCCGGA 76229 Query 2842 CAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATTGCTAAATACAACCAATTGCTT 2901 |||||||| || || || || ||| | || | | ||| ||||| || |||||| | Sbjct 76230 CAAATTAAAACTGGCTCTATGAGCCGTTCAGATAGAACTGCGAAATATAATCAATTGATC 76289 Query 2902 CGTATCGAAGA 2912 | || ||||| Sbjct 76290 AGAATAGAAGA 76300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156035850332544