Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15]
1,376 sequences; 930,507,853 total letters
Query= NC_031905.1
Length=42894
Score E
Sequences producing significant alignments: (Bits) Value
seq341 125 2e-24
>seq341
Length=107858
Score = 125 bits (138), Expect = 2e-24
Identities = 268/394 (68%), Gaps = 16/394 (4%)
Strand=Plus/Plus
Query 30689 AAAGTATTCAGTTGTTTTGCTTGCGGTGGTGGAAGTTCATTTGGTTATAAATTAGCCGGA 30748
|| ||||| ||||||||||| || |||||||| | | | || ||||||||||| ||
Sbjct 17402 AATGTATTTAGTTGTTTTGCGTGTGGTGGTGGCTCTACTATGGGATATAAATTAGCAGGC 17461
Query 30749 TTTGATGTTTTAGGATGCAATGAAATTGATCCGAAAATGATTGAATCGTATGTTGCAAAT 30808
| || |||||| ||| || ||||| ||||| ||| || ||| |||
Sbjct 17462 TGCACAGTATTAGGAAATTGTGACATAGATCCTCAAATGGTTGCATTATATCAAAACAAT 17521
Query 30809 CATAAACCAAAATATGCTTTTT---TGGAACCAATTCAAACGTTCAA-AT-TGCGTGATG 30863
||||| ||| ||| | | || |||| || || || || || | | | |||
Sbjct 17522 CATAAGCCACGCTATTCGTATTGCATGGATATAAGAGAAT--TTAAAGATATCCCTAATG 17579
Query 30864 AT---TTACCGGAAGATTTATTTAATTTGGATATTTTGGACGGTTCGCCGCCGTGTTCAA 30920
| ||||| | ||| |||||||||| ||||| ||||| |||||||| || |||||
Sbjct 17580 CTAAATTACCCGCAGAACTATTTAATTTAGATATATTGGATGGTTCGCCACCATGTTCTT 17639
Query 30921 GTTTTTCAATGTCGGGTTCACGTGAAAAAGATTGGGGCAAAGAAAAGAAAT---TTCGTG 30977
||||| | | ||| | | ||| ||| ||||| || ||||||| |||| |
Sbjct 17640 CATTTTCTACTGCAGGTGTAAGAGAAGAAGCCTGGGG---AGTTAAGAAATCTTTTCGAG 17696
Query 30978 AGGGTCAAGCAAAACAAATTCTTGATAATTTGTTTTTTGATTTTATTGATTTGGCCGAAA 31037
|||||||||| |||||| | | ||| || |||| ||||| ||||||| | || || |
Sbjct 17697 AGGGTCAAGCGAAACAAGTATTAGATGATCTGTTCTTTGAGTTTATTGGAGTAGCAGAGA 17756
Query 31038 AATTACAACCGAAAGTCGTTGTGGCTGAAAACGT 31071
| ||| |||| ||||| |||| || || || ||
Sbjct 17757 AGTTAAAACCAAAAGTTATTGTTGCAGAGAATGT 17790
Score = 125 bits (138), Expect = 2e-24
Identities = 268/394 (68%), Gaps = 16/394 (4%)
Strand=Plus/Plus
Query 30689 AAAGTATTCAGTTGTTTTGCTTGCGGTGGTGGAAGTTCATTTGGTTATAAATTAGCCGGA 30748
|| ||||| ||||||||||| || |||||||| | | | || ||||||||||| ||
Sbjct 67959 AATGTATTTAGTTGTTTTGCGTGTGGTGGTGGCTCTACTATGGGATATAAATTAGCAGGC 68018
Query 30749 TTTGATGTTTTAGGATGCAATGAAATTGATCCGAAAATGATTGAATCGTATGTTGCAAAT 30808
| || |||||| ||| || ||||| ||||| ||| || ||| |||
Sbjct 68019 TGCACAGTATTAGGAAATTGTGACATAGATCCTCAAATGGTTGCATTATATCAAAACAAT 68078
Query 30809 CATAAACCAAAATATGCTTTTT---TGGAACCAATTCAAACGTTCAA-AT-TGCGTGATG 30863
||||| ||| ||| | | || |||| || || || || || | | | |||
Sbjct 68079 CATAAGCCACGCTATTCGTATTGCATGGATATAAGAGAAT--TTAAAGATATCCCTAATG 68136
Query 30864 AT---TTACCGGAAGATTTATTTAATTTGGATATTTTGGACGGTTCGCCGCCGTGTTCAA 30920
| ||||| | ||| |||||||||| ||||| ||||| |||||||| || |||||
Sbjct 68137 CTAAATTACCCGCAGAACTATTTAATTTAGATATATTGGATGGTTCGCCACCATGTTCTT 68196
Query 30921 GTTTTTCAATGTCGGGTTCACGTGAAAAAGATTGGGGCAAAGAAAAGAAAT---TTCGTG 30977
||||| | | ||| | | ||| ||| ||||| || ||||||| |||| |
Sbjct 68197 CATTTTCTACTGCAGGTGTAAGAGAAGAAGCCTGGGG---AGTTAAGAAATCTTTTCGAG 68253
Query 30978 AGGGTCAAGCAAAACAAATTCTTGATAATTTGTTTTTTGATTTTATTGATTTGGCCGAAA 31037
|||||||||| |||||| | | ||| || |||| ||||| ||||||| | || || |
Sbjct 68254 AGGGTCAAGCGAAACAAGTATTAGATGATCTGTTCTTTGAGTTTATTGGAGTAGCAGAGA 68313
Query 31038 AATTACAACCGAAAGTCGTTGTGGCTGAAAACGT 31071
| ||| |||| ||||| |||| || || || ||
Sbjct 68314 AGTTAAAACCAAAAGTTATTGTTGCAGAGAATGT 68347
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 137136959145472
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |