Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_031918.1 Length=45342 Score E Sequences producing significant alignments: (Bits) Value seq82 141 3e-29 >seq82 Length=657493 Score = 141 bits (156), Expect = 3e-29 Identities = 219/310 (71%), Gaps = 2/310 (1%) Strand=Plus/Plus Query 33618 AACAATTTCTGTGGTGTATTTTTCAACTCCAGCATTATCAGTCCATTTTCTAGTGCGCAA 33677 |||||||||||| ||||| ||| | ||| | ||| |||||||||||| |||| Sbjct 205895 AACAATTTCTGTAGTGTAGCGTTCTAAACCATTTTGATCCTGCCATTTTCTAGTTTGCAA 205954 Query 33678 CTGA-CCTTCAAAATAAACTTGTGAGCCTTTCCTAAGATACTCACCAGCAATTTCAGCGA 33736 ||| ||||||| ||| ||||| || ||||| | |||||| || || ||||||||||| | Sbjct 205955 -TGATCCTTCAATATATACTTGAGAACCTTTTCGAAGATATTCGCCTGCAATTTCAGCTA 206013 Query 33737 GCTTGCCAAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTTTTTCTCACCAGTAGCCT 33796 || ||||| | ||||| | ||||||||||||| || || || || |||||| | Sbjct 206014 ATTTACCAAATAAAACTATTCTATGCCATTCAGTTTTTTCTTTATTTTCTCCAGTATTTT 206073 Query 33797 TATCATTCCATGATTCCGATGTAGCAACAGATACGTTGGCAACAGCGCCGCCATTTGGCA 33856 |||| ||||| ||| || || || | | | || | || || ||||| |||| Sbjct 206074 TATCTTTCCAATTTTCTGAAGTTGCTAATGTCATATTCACTACCGCATTACCATTAGGCA 206133 Query 33857 TGTATCGCACTTCTGGGTCCTGGCCTAATGTGCCGAGGATGATTACTTTATTTACGCCGC 33916 | || || ||||| || || || ||||| || | | || ||||||||||| || | Sbjct 206134 TATAACGAACTTCAGGATCTTGACCTAAATGCCCAATCAGAATAACTTTATTTACACCTC 206193 Query 33917 GAGTTGCCAT 33926 | | ||||| Sbjct 206194 TACTAGCCAT 206203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144970431144448