Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_031919.1 Length=42696 Score E Sequences producing significant alignments: (Bits) Value seq341 125 2e-24 >seq341 Length=107858 Score = 125 bits (138), Expect = 2e-24 Identities = 268/394 (68%), Gaps = 16/394 (4%) Strand=Plus/Plus Query 30491 AAAGTATTCAGTTGTTTTGCTTGCGGTGGTGGAAGTTCATTTGGTTATAAATTAGCCGGA 30550 || ||||| ||||||||||| || |||||||| | | | || ||||||||||| || Sbjct 17402 AATGTATTTAGTTGTTTTGCGTGTGGTGGTGGCTCTACTATGGGATATAAATTAGCAGGC 17461 Query 30551 TTTGATGTTTTAGGATGCAATGAAATTGATCCGAAAATGATTGAATCGTATGTTGCAAAT 30610 | || |||||| ||| || ||||| ||||| ||| || ||| ||| Sbjct 17462 TGCACAGTATTAGGAAATTGTGACATAGATCCTCAAATGGTTGCATTATATCAAAACAAT 17521 Query 30611 CATAAACCAAAATATGCTTTTT---TGGAACCAATTCAAACGTTCAA-AT-TGCGTGATG 30665 ||||| ||| ||| | | || |||| || || || || || | | | ||| Sbjct 17522 CATAAGCCACGCTATTCGTATTGCATGGATATAAGAGAAT--TTAAAGATATCCCTAATG 17579 Query 30666 AT---TTACCGGAAGATTTATTTAATTTGGATATTTTGGACGGTTCGCCGCCGTGTTCAA 30722 | ||||| | ||| |||||||||| ||||| ||||| |||||||| || ||||| Sbjct 17580 CTAAATTACCCGCAGAACTATTTAATTTAGATATATTGGATGGTTCGCCACCATGTTCTT 17639 Query 30723 GTTTTTCAATGTCGGGTTCACGTGAAAAAGATTGGGGCAAAGAAAAGAAAT---TTCGTG 30779 ||||| | | ||| | | ||| ||| ||||| || ||||||| |||| | Sbjct 17640 CATTTTCTACTGCAGGTGTAAGAGAAGAAGCCTGGGG---AGTTAAGAAATCTTTTCGAG 17696 Query 30780 AGGGTCAAGCAAAACAAATTCTTGATAATTTGTTTTTTGATTTTATTGATTTGGCCGAAA 30839 |||||||||| |||||| | | ||| || |||| ||||| ||||||| | || || | Sbjct 17697 AGGGTCAAGCGAAACAAGTATTAGATGATCTGTTCTTTGAGTTTATTGGAGTAGCAGAGA 17756 Query 30840 AATTACAACCGAAAGTCGTTGTGGCTGAAAACGT 30873 | ||| |||| ||||| |||| || || || || Sbjct 17757 AGTTAAAACCAAAAGTTATTGTTGCAGAGAATGT 17790 Score = 125 bits (138), Expect = 2e-24 Identities = 268/394 (68%), Gaps = 16/394 (4%) Strand=Plus/Plus Query 30491 AAAGTATTCAGTTGTTTTGCTTGCGGTGGTGGAAGTTCATTTGGTTATAAATTAGCCGGA 30550 || ||||| ||||||||||| || |||||||| | | | || ||||||||||| || Sbjct 67959 AATGTATTTAGTTGTTTTGCGTGTGGTGGTGGCTCTACTATGGGATATAAATTAGCAGGC 68018 Query 30551 TTTGATGTTTTAGGATGCAATGAAATTGATCCGAAAATGATTGAATCGTATGTTGCAAAT 30610 | || |||||| ||| || ||||| ||||| ||| || ||| ||| Sbjct 68019 TGCACAGTATTAGGAAATTGTGACATAGATCCTCAAATGGTTGCATTATATCAAAACAAT 68078 Query 30611 CATAAACCAAAATATGCTTTTT---TGGAACCAATTCAAACGTTCAA-AT-TGCGTGATG 30665 ||||| ||| ||| | | || |||| || || || || || | | | ||| Sbjct 68079 CATAAGCCACGCTATTCGTATTGCATGGATATAAGAGAAT--TTAAAGATATCCCTAATG 68136 Query 30666 AT---TTACCGGAAGATTTATTTAATTTGGATATTTTGGACGGTTCGCCGCCGTGTTCAA 30722 | ||||| | ||| |||||||||| ||||| ||||| |||||||| || ||||| Sbjct 68137 CTAAATTACCCGCAGAACTATTTAATTTAGATATATTGGATGGTTCGCCACCATGTTCTT 68196 Query 30723 GTTTTTCAATGTCGGGTTCACGTGAAAAAGATTGGGGCAAAGAAAAGAAAT---TTCGTG 30779 ||||| | | ||| | | ||| ||| ||||| || ||||||| |||| | Sbjct 68197 CATTTTCTACTGCAGGTGTAAGAGAAGAAGCCTGGGG---AGTTAAGAAATCTTTTCGAG 68253 Query 30780 AGGGTCAAGCAAAACAAATTCTTGATAATTTGTTTTTTGATTTTATTGATTTGGCCGAAA 30839 |||||||||| |||||| | | ||| || |||| ||||| ||||||| | || || | Sbjct 68254 AGGGTCAAGCGAAACAAGTATTAGATGATCTGTTCTTTGAGTTTATTGGAGTAGCAGAGA 68313 Query 30840 AATTACAACCGAAAGTCGTTGTGGCTGAAAACGT 30873 | ||| |||| ||||| |||| || || || || Sbjct 68314 AGTTAAAACCAAAAGTTATTGTTGCAGAGAATGT 68347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136503369498496