Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq7 86.0 9e-12 >seq7 Length=43258566 Score = 86.0 bits (94), Expect = 9e-12 Identities = 152/218 (70%), Gaps = 9/218 (4%) Strand=Plus/Plus Query 162619 ATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATCGTC 162678 || |||||||| ||||| | ||| |||| |||| |||||||| || || || | Sbjct 15652275 ATCCTATTCAACCACGAGTCACCCCGCCGAGGTGAGAACTTCGTCACTCGAAAAATAACC 15652334 Query 162679 CGAGCCTTGTCCCGAATTAGTGTGGGACTCCA----AAGTGATCTACAACTTGGAAACCT 162734 | ||| || | || | || ||||| || |||| ||| | || |||||| | Sbjct 15652335 TGGGCCCTGGGGAGGATCAAGGTCGGACTGCAGACGAAGT--TCTTC--CTGGGAAACAT 15652390 Query 162735 CAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGCT 162794 | || ||| |||||||| ||| |||||| | ||||| |||||||||||||| Sbjct 15652391 ACAGGCGTCACGAGACTGGGGTT-CGCAGGGGACTACATGGAGGCAATGTGGTTGATGCT 15652449 Query 162795 TCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTG 162832 ||||| ||||| ||| ||||||| ||| | ||||||| Sbjct 15652450 GCAGCAGGAGAAACCATATGATTACGTGGTGGCAACTG 15652487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691447306901760