Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_031940.1 Length=77375 Score E Sequences producing significant alignments: (Bits) Value seq477 131 8e-26 seq1048 91.5 7e-14 >seq477 Length=38297 Score = 131 bits (144), Expect = 8e-26 Identities = 128/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29597 GTAAAACCCCTTCTTGTCCGGTTGCGGCGCAACCTGACCCCGAAGTGATGATCACCGATC 29656 |||||| ||| |||||| | ||| ||||| | ||||| |||||| ||||||| || | Sbjct 29634 GTAAAAAACCTACTTGTCAGCCTGCTGCGCAGACCGACCCTGAAGTGTTGATCACTGACC 29575 Query 29657 AGGCGATTGAGGTTTTAACCCACCTGAACCAGGTAAGTGGCTCCCGGTATCAGAAGTCAA 29716 | |||| |||||||||| |||||||||| || | ||| ||||| ||||||| || | Sbjct 29574 AAGCGAAGGAGGTTTTAAAACACCTGAACCTTGTGACTGGTTCCCGCTATCAGACCTCGA 29515 Query 29717 AAACCTCCCTGGAAAACATCCGTGCCCGACTGCGTGAGGGGTACA 29761 ||||||| |||||||||||||| || || | || || |||| || Sbjct 29514 AAACCTCACTGGAAAACATCCGGGCACGCATTCGCGATGGGTTCA 29470 Score = 118 bits (130), Expect = 5e-22 Identities = 264/392 (67%), Gaps = 6/392 (2%) Strand=Plus/Minus Query 75056 TGAGGCACTAATGAACCAACAATTATTTCAAAAGGCGGCTGGTATTAGCGCCGGGCAGGC 75115 |||||| ||||| ||| | ||||||| |||||||||||| ||||||||| || Sbjct 24231 TGAGGCCACAATGACACAAAACGAATTTCAATGGGCGGCTGGTATCAGCGCCGGGTTAGC 24172 Query 75116 TGCGCGCTGGTTTCCGCACATTGATGCGGCGATGAAGGAATTCGGCATTACAGCA-CCAG 75174 ||||||||||| ||| || | || | | || ||| || | || | |||| Sbjct 24171 TGCGCGCTGGTATCCTCATCTGCTCGCCACCTTTGCTGAGTTCT-CAATCGAGAAGCCAG 24113 Query 75175 CGGATCAGGCGATGTTTATCGCTCAGGTAGGCCATGAGTCGATGGGGTTTAGCGCCGTAG 75234 ||| ||||| |||||||| |||||||| || ||||| || || |||| | | | Sbjct 24112 CGGCACAGGCAATGTTTATTGCTCAGGTTGGGCATGAATCAGCTGGCTTTACCCGCACGG 24053 Query 75235 TTGAAAATTTTAACTACACGCCATCTGCGCTGGTGGCGACGTTCGGAAAGAGGATCACAC 75294 | || | | |||||||||||| | || | | || || || ||| | ||||| | Sbjct 24052 TAGAGAGCCTGAACTACACGCCACAGGGATTGCTTTCAACCTTTGGGAAGCGCATCACTC 23993 Query 75295 AGCAGCAGGCTG--ATGCCCTTGGCAGAACATCCGGACATGCAGCTCGTCAGGATGCTAT 75352 | ||||||| |||| |||| | ||| | | ||| || ||| || || Sbjct 23992 CCTATCAGGCTGGCATGC--TTGGACGTACAACGGCACACCTGGCAAACCAGCCGGCGAT 23935 Query 75353 TGCCAATCTGGTGTATAGCAACCGGCTGGGTAACAAAGCACCCGGTGATGGCTGGAAATA 75412 ||| || ||||| || | | || ||||| || ||| ||| |||||||||||||||||| Sbjct 23934 TGCAAACCTGGTATACGCCGATCGCCTGGGCAATAAATCACGCGGTGATGGCTGGAAATA 23875 Query 75413 TCGTGGTAGAGGATTAATTCAAATCACTGGCC 75444 |||||| | || | ||||| | || |||| Sbjct 23874 TCGTGGGCGTGGGCTGATTCAGGTTACCGGCC 23843 Score = 118 bits (130), Expect = 5e-22 Identities = 264/392 (67%), Gaps = 6/392 (2%) Strand=Plus/Minus Query 35593 TGAGGCACTAATGAACCAACAATTATTTCAAAAGGCGGCTGGTATTAGCGCCGGGCAGGC 35652 |||||| ||||| ||| | ||||||| |||||||||||| ||||||||| || Sbjct 24231 TGAGGCCACAATGACACAAAACGAATTTCAATGGGCGGCTGGTATCAGCGCCGGGTTAGC 24172 Query 35653 TGCGCGCTGGTTTCCGCACATTGATGCGGCGATGAAGGAATTCGGCATTACAGCA-CCAG 35711 ||||||||||| ||| || | || | | || ||| || | || | |||| Sbjct 24171 TGCGCGCTGGTATCCTCATCTGCTCGCCACCTTTGCTGAGTTCT-CAATCGAGAAGCCAG 24113 Query 35712 CGGATCAGGCGATGTTTATCGCTCAGGTAGGCCATGAGTCGATGGGGTTTAGCGCCGTAG 35771 ||| ||||| |||||||| |||||||| || ||||| || || |||| | | | Sbjct 24112 CGGCACAGGCAATGTTTATTGCTCAGGTTGGGCATGAATCAGCTGGCTTTACCCGCACGG 24053 Query 35772 TTGAAAATTTTAACTACACGCCATCTGCGCTGGTGGCGACGTTCGGAAAGAGGATCACAC 35831 | || | | |||||||||||| | || | | || || || ||| | ||||| | Sbjct 24052 TAGAGAGCCTGAACTACACGCCACAGGGATTGCTTTCAACCTTTGGGAAGCGCATCACTC 23993 Query 35832 AGCAGCAGGCTG--ATGCCCTTGGCAGAACATCCGGACATGCAGCTCGTCAGGATGCTAT 35889 | ||||||| |||| |||| | ||| | | ||| || ||| || || Sbjct 23992 CCTATCAGGCTGGCATGC--TTGGACGTACAACGGCACACCTGGCAAACCAGCCGGCGAT 23935 Query 35890 TGCCAATCTGGTGTATAGCAACCGGCTGGGTAACAAAGCACCCGGTGATGGCTGGAAATA 35949 ||| || ||||| || | | || ||||| || ||| ||| |||||||||||||||||| Sbjct 23934 TGCAAACCTGGTATACGCCGATCGCCTGGGCAATAAATCACGCGGTGATGGCTGGAAATA 23875 Query 35950 TCGTGGTAGAGGATTAATTCAAATCACTGGCC 35981 |||||| | || | ||||| | || |||| Sbjct 23874 TCGTGGGCGTGGGCTGATTCAGGTTACCGGCC 23843 Score = 87.8 bits (96), Expect = 9e-13 Identities = 69/80 (86%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 65484 GCGACTCATCCGGTCATTCGTATGCCACCGGCGGCTACTTCGTGGGCGTCCTGCCTGTTC 65543 |||| |||||| | ||||| |||| | ||||||||||||||||||||||||||||||| Sbjct 33167 GCGAATCATCCCGATCTTCGTGTGCCTCGGGCGGCTACTTCGTGGGCGTCCTGCCTGTTC 33108 Query 65544 GCTGCTCTATGAATGCAAAT 65563 |||||| |||||| ||||| Sbjct 33107 GCTGCT-GATGAAT-CAAAT 33090 Score = 87.8 bits (96), Expect = 9e-13 Identities = 69/80 (86%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 25896 GCGACTCATCCGGTCATTCGTATGCCACCGGCGGCTACTTCGTGGGCGTCCTGCCTGTTC 25955 |||| |||||| | ||||| |||| | ||||||||||||||||||||||||||||||| Sbjct 33167 GCGAATCATCCCGATCTTCGTGTGCCTCGGGCGGCTACTTCGTGGGCGTCCTGCCTGTTC 33108 Query 25956 GCTGCTCTATGAATGCAAAT 25975 |||||| |||||| ||||| Sbjct 33107 GCTGCT-GATGAAT-CAAAT 33090 >seq1048 Length=3623 Score = 91.5 bits (100), Expect = 7e-14 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 55736 CAATGCGCTGGGCGGTAATTCAATTGTGCTCGGTGATAACGATACCGGGTTTAAACAGGA 55795 ||||| || ||||||||||| ||||| || ||||| || || ||||| ||||||||| | Sbjct 1077 CAATGGTCTTGGCGGTAATTCCATTGTTCTGGGTGACAATGACACCGGCTTTAAACAGAA 1018 Query 55796 TGGCGACGGCGTTCTGGGTATTTACGCCAATAATGCCC 55833 || || ||| |||||| | |||||||||||| |||| Sbjct 1017 CGGAGATGGCATTCTGGATGTTTACGCCAATAGCGCCC 980 Score = 91.5 bits (100), Expect = 7e-14 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 16144 CAATGCGCTGGGCGGTAATTCAATTGTGCTCGGTGATAACGATACCGGGTTTAAACAGGA 16203 ||||| || ||||||||||| ||||| || ||||| || || ||||| ||||||||| | Sbjct 1077 CAATGGTCTTGGCGGTAATTCCATTGTTCTGGGTGACAATGACACCGGCTTTAAACAGAA 1018 Query 16204 TGGCGACGGCGTTCTGGGTATTTACGCCAATAATGCCC 16241 || || ||| |||||| | |||||||||||| |||| Sbjct 1017 CGGAGATGGCATTCTGGATGTTTACGCCAATAGCGCCC 980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247471049840896