Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq82 389 6e-106 seq1284 264 2e-68 seq6 150 3e-34 >seq82 Length=47206 Score = 389 bits (430), Expect = 6e-106 Identities = 243/256 (95%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| | Sbjct 22467 GTACAAAGGGCAAGGACATAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 22410 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 22409 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 22350 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 22349 CCCGGGCCTGTCGGCCAAGGTGTGA-ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 22291 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 22290 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACG 22231 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 22230 GCCATAGTCCCTCTAA 22215 >seq1284 Length=2256 Score = 264 bits (292), Expect = 2e-68 Identities = 199/229 (87%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| |||| ||||||| |||||||||||||||| | Sbjct 1622 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCT-GATGACTTGCGCTTACTAGGAATT-C 1565 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | ||| | |||||| Sbjct 1564 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTAACAAGATT 1505 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| || || ||| ||||| | | |||||||| | ||||||||||||||||||| Sbjct 1504 ACCCAGATCTTTCGAACAAGGA-AGATACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCG 1446 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1445 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 1397 >seq6 Length=32494073 Score = 150 bits (166), Expect = 3e-34 Identities = 110/125 (88%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 129 TGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAAC 188 |||||||||| ||| | |||||||||||| |||||||||| | |||||||||||||||| Sbjct 161914 TGTCGGCCAATGTGTGA-ACTCGTTGAATAGATCAGTGTAGTGTGCGTGCGGCCCAGAAC 161856 Query 189 ATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CT 247 |||||||||||||||| || ||||||||| ||||||||| ||| |||||||||||| | Sbjct 161855 ATCTAAGGGCATCACAAACTTGTTATTGCATCAAACTTCATTGGTCTAAAAGGCCATAGT 161796 Query 248 CCCTC 252 ||||| Sbjct 161795 CCCTC 161791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751981459675