Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1284 499 6e-139 seq82 233 4e-59 seq8 232 1e-58 seq7 87.8 3e-15 seq2 73.4 7e-11 >seq1284 Length=2256 Score = 499 bits (552), Expect = 6e-139 Identities = 299/314 (95%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 ||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| |||||| Sbjct 662 TGGTCCGGCCGGGTCTTTCCTCCTGGGGAGCCGCATGCCCTTCACTGGGTGTGTCGGGGA 721 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 722 ACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTATGCTCGAATACAT 781 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 782 TAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTCGGACCGCCGT 841 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 842 AATGATTAATAGGGATGGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 901 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || Sbjct 902 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAGGGA 961 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 962 ACGAAAGTTAGGGG 975 >seq82 Length=47206 Score = 233 bits (258), Expect = 4e-59 Identities = 203/248 (82%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 21575 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 21634 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | || | ||||| |||||| | ||| || |||||||| Sbjct 21635 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 21693 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 21694 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 21753 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 21754 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 21812 Query 311 GTTAGGGG 318 ||| |||| Sbjct 21813 GTTGGGGG 21820 >seq8 Length=44809562 Score = 232 bits (256), Expect = 1e-58 Identities = 203/249 (82%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCA 129 ||| |||||||||| ||||||||||| |||||||| ||| |||| | ||||||||||| Sbjct 41484589 ACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAACCTACGCTCTGTATACATTAGCA 41484648 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 ||| |||| | |||||| | || | ||||| |||||| | ||| || ||||||| Sbjct 41484649 TGGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGA 41484707 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| ||||| ||||||||| | ||||| || ||||||||||||||||||||||||| Sbjct 41484708 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 41484767 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | ||||| ||| ||||||||||| || |||||||||||||||||||||| ||||||| Sbjct 41484768 TGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAA 41484826 Query 310 AGTTAGGGG 318 |||| |||| Sbjct 41484827 AGTTGGGGG 41484835 >seq7 Length=41685129 Score = 87.8 bits (96), Expect = 3e-15 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||||||||| ||||| || | | || || |||||| |||||||||||||||| Sbjct 27640276 GATTAATAGGGACAGTCGAGGCCATTCTTCTTTTATAGTCAGAAGTGAAATTCTTGGATT 27640335 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGA 285 ||| ||||| ||| | ||||||||| ||| ||||||| Sbjct 27640336 TATGAAAGACGAACAATTGCGAAAGCATTCGCCAAGGA 27640373 >seq2 Length=44367670 Score = 73.4 bits (80), Expect = 7e-11 Identities = 62/75 (83%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||||||||||||||||||||| || | || || | |||||||||||| Sbjct 38062549 CTGTTACTTTGAAAAAATTAGAGTGTTCAAAACAAGACTACTTTCGGTATACATTAGCAT 38062490 Query 131 GGAATAATAGAATAG 145 ||||||| | |||| Sbjct 38062489 GGAATAACATCATAG 38062475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915176708160