Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq8 857 0.0 >seq8 Length=44809562 Score = 857 bits (950), Expect = 0.0 Identities = 592/666 (89%), Gaps = 4/666 (1%) Strand=Plus/Minus Query 22 GTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAA 81 |||| |||||| ||| ||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 38076964 GTGTAAAGCTCTTTCAACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAA 38076905 Query 82 TTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAG 141 |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 38076904 TTTCATCTAAAGCTAAATATGGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAG 38076845 Query 142 ATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCT 201 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 38076844 ATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCT 38076785 Query 202 TGCAACCAGACTTGCCCGCAGTTGCTCAACCGGC-CCCTCGGCCGGTGCACTCTTCTGCG 260 |||| ||||||||| ||| | || ||| | || ||| || |||||||| | ||| Sbjct 38076784 TGCACCCAGACTTGGGCGCTGCTGATCACCTTGCGTTCTCCGCGAGTGCACTCGACAGCG 38076725 Query 261 GTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGG 320 |||||||||||| | ||||| || ||||||||||| |||| || || | |||||| Sbjct 38076724 CACAGGCCAGCATCGGTTCGGGTGGCTGGATAAAGGCCGTAGGAACGTAGCTCTCTTCGG 38076665 Query 321 GGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGC--TCCGGC 378 || ||||||||||| |||| |||| |||| | |||| |||| |||||| || ||| Sbjct 38076664 GGAGTGTTATAGCCTACGGTGCCATGCAGCCCAGCCGGACCGAGGACCGCGCCTTCGGGC 38076605 Query 379 TAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAA 438 ||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| Sbjct 38076604 TAGGATGCTGGCGTAATGGGTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAA 38076545 Query 439 CATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGG 498 |||||||||||||||||||||| |||||| | |||| |||||||||||||| ||||| | Sbjct 38076544 CATCTATGCGAGTGTTTGGGTGGTAAACCCATACGCGGAATGAAAGTGAACGTAGGTGAG 38076485 Query 499 AA-CCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAG 557 || ||| | ||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 38076484 AACCCCTTTGGGGCGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAG 38076425 Query 558 CATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAA 617 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 38076424 CATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAA 38076365 Query 618 ACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAG 677 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 38076364 ACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGCATAG 38076305 Query 678 GGGCGA 683 |||||| Sbjct 38076304 GGGCGA 38076299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079945409750