Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq109 107 5e-21 >seq109 Length=45177 Score = 107 bits (118), Expect = 5e-21 Identities = 195/282 (69%), Gaps = 10/282 (4%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || || | |||| ||| | ||| ||||||||||||| | | |||||||| Sbjct 44773 TAAACAGTATCTGCACTGTTATTCCAATTTCACTGAGCCAATCCTTGAGACAGCTGTTGT 44714 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| ||||| |||| | | | | ||| | | ||||| ||||||||||||||||| Sbjct 44713 ATCGTTAAATCATTCATGCAAGACCGCATTTAACGGCCAAGGTATTTCGCTACCTTAGGA 44654 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAA----GAGCTT---CGCGTT 179 || | || | || ||||||| || | ||||| ||| |||| ||||| || Sbjct 44653 CCCTCATAGGTAAGGCCGCCATTCATCGGGGTTTCCTTCAAAACCTAGCTTATATTAGTC 44594 Query 180 AGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACT 239 | |||| ||| |||||| ||| || ||||||| |||||| | |||| | | | Sbjct 44593 AACTAAGAAAATCCGTTAACCGGCCGACATCGGGCAGAAATCACACTCAATACTTTGATT 44534 Query 240 T-TCGTGT--TTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 | | | | |||| ||||||| |||||| | |||||||||| Sbjct 44533 TATTATCTTATTGCGGAGTGCTTTGTTTTAATTAAACAGTCG 44492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260767912640