Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1284 352 5e-95 seq82 307 2e-81 seq6 223 6e-56 >seq1284 Length=2256 Score = 352 bits (390), Expect = 5e-95 Identities = 236/259 (91%), Gaps = 3/259 (1%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1479 TACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 1420 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||||||||||||||||| | || | ||| ||||||||||||||||||| || Sbjct 1419 ACCTGTTATTGCCTCAAACTTCCATCGACTTGC-GCCGATAGTCCCTCTAAGAAGCCGGC 1361 Query 121 CACCAACCATAGTCGATGG-GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 |||| || ||| | | ||||||||||||||||||||||||||||||||||| |||| Sbjct 1360 GACCAGCC-TAGGCTAGCCTGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATT 1302 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 1301 AAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAG 1242 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| |||||||||| Sbjct 1241 AAAGAGCTCTCAATCTGTC 1223 >seq82 Length=47206 Score = 307 bits (340), Expect = 2e-81 Identities = 224/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 22324 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 22265 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || | | | ||||||||||||||||||| ||| Sbjct 22264 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGGCC 22205 Query 122 ACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || | || | | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 22204 GTGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 22145 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 22144 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 22085 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 22084 AAAGAGCTCTCAGTCTGTC 22066 >seq6 Length=32494073 Score = 223 bits (246), Expect = 6e-56 Identities = 199/246 (81%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||| | |||||||||||||||||||||||||||||||| || ||||||||| || Sbjct 161883 TCAGTGTAGTGTGCGTGCGGCCCAGAACATCTAAGGGCATCACAAACTTGTTATTGCATC 161824 Query 76 AAACTTCCATTGG-CTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA--TAG 132 ||||||| ||||| || ||| | |||||||||||| ||||||| || | Sbjct 161823 AAACTTC-ATTGGTCTAAAAGGCCATAGTCCCTCTACGAAGCCAAATGTGAAGAGATTCC 161765 Query 133 TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 || | | |||| ||||||||| ||||||||||| ||| || ||| ||||||| | || Sbjct 161764 TCCACGTAGCTAGCTAGCAGGTTGAGGTCTCGTTCATTAACGAAATAAACCAGATAGATT 161705 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 |||||||||||||||| | |||| |||||||| ||||||||||||||||||| | | || Sbjct 161704 GCTCCACCAACTAAGAATGACCATTCACCACCATCCATAGAATCAAGAAAGAGTTCTGAA 161645 Query 253 TCTGTC 258 |||||| Sbjct 161644 TCTGTC 161639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796780355145