Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq6 114 3e-23 >seq6 Length=32494073 Score = 114 bits (126), Expect = 3e-23 Identities = 205/284 (72%), Gaps = 19/284 (7%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | ||||||||| ||||||||||| |||||| ||||| | Sbjct 19099754 CCACAACTCAT-CCGCTGA-TTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT-TTC 19099698 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| | |||| |||| |||| |||||||| ||| | |||||||| | | ||| Sbjct 19099697 ACCCAAGC-TTCATCCTGGTCATA-GATAGATCACCCAG-GTTCGGGTCCA-TAAGCAGT 19099642 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCT--ATTCGGTTAAGCTT 186 ||| | |||||| ||||||||| |||||||||| |||| | ||| |||| | Sbjct 19099641 GAC-AATTGCCCTATGAAGACTCGC-TTTCGCTACGGCTCCGGTGGGTTCCCTTAA-CCA 19099585 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAA 243 ||||||| || |||||| | | |||| | ||| ||| |||| |||| ||| Sbjct 19099584 AGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGCCC----C 19099529 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATT 287 || ||||||||||||| | |||||||||| | |||||| Sbjct 19099528 AGGCTCCTCCCACTGCTTGGGAACTTACGGTTTCATGTTCTATT 19099485 Score = 86.0 bits (94), Expect = 2e-14 Identities = 171/240 (71%), Gaps = 15/240 (6%) Strand=Plus/Minus Query 55 TCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGG 114 |||| ||||| | |||||| ||| || |||| ||||| ||||||| ||| | || ||| Sbjct 21278375 TCCACTTAGTT-TCACCCAAGCTT-CATCCTGGTCATAG-ATAGATCACCCAGGTT-CGG 21278320 Query 115 GTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCT-- 172 ||| || | || ||| | |||||| ||||||||| |||||||||| |||| | Sbjct 21278319 GTCCATAAGC-AGTGACAATT-GCCCTATGAAGACTCGC-TTTCGCTACGGCTCCGGTGG 21278263 Query 173 ATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAG 232 ||| |||| | ||||||| || |||||| | | |||| | ||| ||| |||| | Sbjct 21278262 GTTCCCTTAA-CCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGG 21278204 Query 233 TCACCCAA--CAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCA 290 ||| || | || ||||| ||||||| || |||||||||| | ||||||||| Sbjct 21278203 TCA---AAGCCCCAGGCTCCTCCCTCTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCA 21278147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241568401280