Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq1284 181 1e-43 seq82 80.6 3e-13 seq8 77.0 4e-12 >seq1284 Length=2256 Score = 181 bits (200), Expect = 1e-43 Identities = 158/191 (83%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 8 AGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGG 67 ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | Sbjct 830 AGAAACCAACAAAATAGAACCACACGTCCTATTCTATTATTCCATGCTAATGTATTCGAG 771 Query 68 CGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACA 127 | || |||||||||||||||||||||||| |||| ||||||||||||||||| | |||| Sbjct 770 CATAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGTTCCCCGACACA 711 Query 128 -CCAATGAA-GGCATACGGGCTCACCAAGAGG-TAGGGCTGGGTAATGCAGTACTCGCCG 184 ||| |||| ||||| | ||||| ||| |||| || | || |||| | ||| | Sbjct 710 CCCAGTGAAGGGCATGC-GGCTCCCCAGGAGGAAAGACCCGGCCGGACCAGTGCACGCGG 652 Query 185 TGAGGCGGACC 195 ||||||||||| Sbjct 651 TGAGGCGGACC 641 >seq82 Length=47206 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 21671 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 21613 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 21612 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 21575 >seq8 Length=44809562 Score = 77.0 bits (84), Expect = 4e-12 Identities = 78/99 (79%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 41484686 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 41484628 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 | |||||||| ||||||||||| |||| |||| ||| Sbjct 41484627 GGTTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGT 41484589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595185325530