Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq1240 138 2e-30 seq5 82.4 1e-13 seq8 77.0 5e-12 >seq1240 Length=227349 Score = 138 bits (152), Expect = 2e-30 Identities = 90/99 (91%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 158 CGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGG 217 |||||| ||||||||||||||| |||||||||||||||||||| ||| || ||||||||| Sbjct 92521 CGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGG 92580 Query 218 GCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGG 256 |||||||||||||||||||| || |||| || ||||||| Sbjct 92581 GCGAACAGCCCAACCCTTGGAACATACTACAACCCCAGG 92619 >seq5 Length=39062406 Score = 82.4 bits (90), Expect = 1e-13 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 100 GTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACG 159 |||| ||||||||||||||||||| ||| || ||||||||| || |||||||| || Sbjct 22920596 GTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCG 22920537 Query 160 GATAGGGACCGAACT 174 |||| |||||||||| Sbjct 22920536 GATATGGACCGAACT 22920522 >seq8 Length=44809562 Score = 77.0 bits (84), Expect = 5e-12 Identities = 77/99 (78%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 37 ATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCAGTACAACTGGTGCACCAGAG 95 |||| ||| |||| ||| |||||| | | | | |||| | ||||||| |||||||| Sbjct 44121720 ATCCTCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGAG 44121661 Query 96 GTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCC 134 || |||| ||||||||||||||||||| ||| || ||| Sbjct 44121660 GTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCC 44121622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780780749620