Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1284 453 2e-125 seq82 311 2e-82 seq6 131 3e-28 >seq1284 Length=2256 Score = 453 bits (502), Expect = 2e-125 Identities = 288/310 (93%), Gaps = 3/310 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||||||| || | ||| ||||||||||||||||| Sbjct 1314 GAACGAGACCTTAACCTGCTAAATAGCCAGGCTAGCCTAGGCTGGTCGCCGGCTTCTTAG 1373 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1374 AGGGACTATCGGCGCAAGTCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 1433 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC-ACCTTGGCC 198 ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | Sbjct 1434 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT--ATCTTCCTTGTTC 1491 Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1492 GAAAGATCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 1551 Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 ||||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||| Sbjct 1552 GCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGCTGATTACGTCCCT 1611 Query 319 GCCCTTTGTA 328 |||||||||| Sbjct 1612 GCCCTTTGTA 1621 >seq82 Length=47206 Score = 311 bits (344), Expect = 2e-82 Identities = 261/316 (83%), Gaps = 13/316 (4%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | ||| | || ||| |||||| Sbjct 22157 GAACGAGACCTCAGCCTGCTAACTAGCTACGTGGAGGCATCCCTTCACGG----CCGGCT 22212 Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 ||||||||||||||| | | | || | | |||||||||||||||||||||||||||||| Sbjct 22213 TCTTAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGAT 22272 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| Sbjct 22273 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTCA-CACC 22331 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||||| Sbjct 22332 TTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCA 22390 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| || Sbjct 22391 ATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAT 22450 Query 313 GTCCCTGCCCTTTGTA 328 |||| ||||||||||| Sbjct 22451 GTCCTTGCCCTTTGTA 22466 >seq6 Length=32494073 Score = 131 bits (144), Expect = 3e-28 Identities = 109/131 (83%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 70 GGCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||| |||||||||||| | || || | | ||||||||| ||||||||| || || Sbjct 161782 GGCTTCGTAGAGGGACTATGGCCTTTTAGACCAATGAAGTTTGATGCAATAACAAGTTTG 161841 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 |||||||||||||||||||||||||||||| | ||||||||| | ||||||||||| Sbjct 161842 TGATGCCCTTAGATGTTCTGGGCCGCACGCACACTACACTGATCTATTCAACGAGTTCA- 161900 Query 189 CACCTTGGCCG 199 ||| ||||||| Sbjct 161901 CACATTGGCCG 161911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947175893760