Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1284 827 0.0 seq82 621 1e-175 seq8 421 2e-115 seq2 399 7e-109 >seq1284 Length=2256 Score = 827 bits (916), Expect = 0.0 Identities = 487/505 (96%), Gaps = 1/505 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 505 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGCATCAGTATTTATTGTCACTACCT 446 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 445 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 386 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 385 TCTCAGGCTCCCTCTCCGGAATAGAACCCTAATTCCCCGTTACCCGTTGAAACCATGGTA 326 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | || ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 325 GTCCCATATACTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCA 266 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 |||||||||||||||||||||||||| |||||||||||| |||||||| ||||| ||||| Sbjct 265 CAAGGCCATGCGATTCGTTAAGTTATCATGAATCACCAAAGAGCCCCGGAGGGCATTGGT 206 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 205 TTTTAATCTAATAAATACACCCCTTCCGAAGTCGGGGCTTTTAGCATGTATTAGCTCTAG 146 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 145 AATTACCACGGTTATCCAAGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 86 Query 421 GCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATGGCTTAATCTTT 479 ||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||| Sbjct 85 GCCATTCGCAGTTTCACGGTATAAATTTGCTTATACTTAGACATGCATGGCTTAATCTTT 26 Query 480 GAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| Sbjct 25 GAGACAAGCATATGACTACTGGCAG 1 >seq82 Length=47206 Score = 621 bits (688), Expect = 1e-175 Identities = 451/513 (88%), Gaps = 13/513 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| |||| |||||| |||| |||||||||||||||||| Sbjct 21352 GTACTCATTCCAATTACCAGACTCAAA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 21294 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 21293 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 21234 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| Sbjct 21233 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTACCACCATGGTA 21174 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 21173 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCAGCA 21114 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293 | ||||||||||||| ||| |||||| |||||||| || |||| | | || | Sbjct 21113 CAAAGGCCATGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAGAGCCCG 21056 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||| Sbjct 21055 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATT 20996 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| ||||| || ||| |||||| |||| |||||||| Sbjct 20995 AGCTCTAGAATTACTACGGTTATCCGAGTAGT-AGTTACCATCAAACAAACTATAACTGA 20937 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 20936 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTCGTTCATACTTACACATGCATGGCT 20877 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 20876 TAATCTTTGAGACAAGCATATGACTACTGGCAG 20844 >seq8 Length=44809562 Score = 421 bits (466), Expect = 2e-115 Identities = 312/358 (87%), Gaps = 11/358 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| |||| |||||| |||| |||||||||||||||||| Sbjct 41484367 GTACTCATTCCAATTACCAGACTCAAA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 41484309 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 41484308 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 41484249 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| Sbjct 41484248 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTACCACCATGGTA 41484189 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 41484188 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCAGCA 41484129 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293 | ||||||||||||| ||| |||||| |||||||| || |||| | | || | Sbjct 41484128 CAAAGGCCATGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAGAGCCCG 41484071 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTA 350 ||| | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||| Sbjct 41484070 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTA 41484013 >seq2 Length=44367670 Score = 399 bits (442), Expect = 7e-109 Identities = 333/403 (83%), Gaps = 21/403 (5%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||| |||||||||||| |||| |||| ||| || |||| |||||||||||||||||| Sbjct 18596337 GTACGCATTCCAATTACCAGACTCAAA-GAGTCCGGTATTGTTATTTATTGTCACTACCT 18596279 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||| |||| ||||||||||||||||||| ||||||||| ||||||||||||||| |||| Sbjct 18596278 CCCCATGTCAGGATTGGGTAATTTGCGCGTCTGCTGCCTACCTTGGATGTGGTAGTCGTT 18596219 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||| ||||||||| |||||| ||||||||||| | || ||||||| ||||||||| Sbjct 18596218 TCTCAGACTCCCTCTCTGGAATCAAACCCTAATTCTCAGTCACCCGTTACCACCATGGTA 18596159 Query 181 G----------GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACC 230 | |||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 18596158 GGATAATGGTAGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGC 18596099 Query 231 ATCGCCGGCTC-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCC 287 | ||| || | ||||||||||||| ||| |||||| |||||||| || |||| | Sbjct 18596098 GTTGCCAGCACAAAGGCCATGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGG 18596041 Query 288 GAAG----GGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTT 342 | || || ||| ||||||||||||||| || ||||||| ||||||||||||| | Sbjct 18596040 GCAGAGCCCGCTTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGT 18595981 Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA 385 ||| ||||||||||||||||||| |||||||||| |||||| Sbjct 18595980 TGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGTA 18595938 Score = 105 bits (116), Expect = 2e-20 Identities = 75/85 (88%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 302 TTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||||||||||| Sbjct 18595924 TTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAG 18595865 Query 361 AATTACCACGGTTATCCATGTAGTA 385 |||||| | |||||||| |||||| Sbjct 18595864 AATTACTAAGGTTATCCGAGTAGTA 18595840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510361560320