Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq8 172 4e-38 seq6 167 2e-36 >seq8 Length=44809562 Score = 172 bits (190), Expect = 4e-38 Identities = 374/548 (68%), Gaps = 15/548 (3%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| ||||| || || ||||||||||| | ||||| ||||| | ||| | ||| Sbjct 36833667 ATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTCTCCCAGGAC 36833608 Query 61156 ATGAATGACTGGGAGCGTTT-ATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 | ||||||||| | | | ||| ||| || | || ||||| ||||| || | || Sbjct 36833607 ACACGCGACTGGGAGAATCTCAACGA-CGGAGAGCGCCACTTCATCAAACACGTCCTCGC 36833549 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| ||||| || ||||| |||||| |||||| | || ||| | || Sbjct 36833548 CTTCTTCGCCGCCTCCGACGGAATCGTCCTCGAGAATCTCGCCTCTCGGTTCATGTCCGA 36833489 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 || || || || |||||||| |||||||| |||||||| || || ||||| |||| Sbjct 36833488 CGTCCAGGTCTCCGAGGCGCGCGCCTTCTACGGGTTCCAGATCGCGATCGAGAACATCCA 36833429 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 ||| ||||||||||| | || | || |||||||||| ||| ||| || || | Sbjct 36833428 CTCCGAGATGTACAGCCTCCTGTTAGACACGTACATCAAGGACAACAAGGAGCGGGACCA 36833369 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCG--GAAAGCGGATTGGGCCTTC 61452 | ||| || |||||||| || || | | | ||| ||| || | |||||| | Sbjct 36833368 TCTCTTCCGCGCGATCGAGACCATCCC--CTGCGTCGCGAAGAAGGCCCAATGGGCCATG 36833311 Query 61453 AATTGGATC-ACCAGTACAACGGCTACATTTGGTGA-ACGATTGCTGGCATTTGCGGTGG 61510 | |||||| | || | | || |||| || | ||| | |||| || ||| | Sbjct 36833310 ACGTGGATCGATGGGTCCCA----GACTTTTGCCGAGAGGATCG-TGGCCTTCGCGTGCG 36833256 Query 61511 TCGAGGGTGTATTTTTCAGTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569 |||| || |||| ||| || | | | || | | ||||| ||| ||||||| || || Sbjct 36833255 TCGAAGGGATATTCTTCTCCGGTAGCTTCTG-CTCGATCTTCTGGCTGAAGAAGCGAGGG 36833197 Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGT 61629 || ||||| || |||||||| ||| ||| |||| || | ||||| ||| |||| || Sbjct 36833196 CTCATGCCTGGGTTGACCTTCTCCAACGAGCTGATCTCGAGAGACGAAGGCCTGCACTGC 36833137 Query 61630 GATTTTGC 61637 ||||| || Sbjct 36833136 GATTTCGC 36833129 >seq6 Length=32494073 Score = 167 bits (184), Expect = 2e-36 Identities = 554/846 (65%), Gaps = 23/846 (3%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| ||||||||||| | ||||| ||||| | ||| ||||| Sbjct 29609095 ATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGACCTCTCCCAAGAC 29609036 Query 61156 ATGAATGACTGGGAGCGT----TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTT 61211 ||||||||| | | ||| ||| || | || ||| | ||||| || | Sbjct 29609035 CCCCGCGACTGGGAGGAAAATCTCAGCGA-CGGAGAGCGCCACTTCGTCAAACACGTCCT 29608977 Query 61212 GGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCA 61271 || ||||| ||||| || ||||| |||||| ||||| | || ||| | Sbjct 29608976 CGCCTTCTTCGCCGCCTCCGACGGGATCGTCCTCGAGAACCTCGCCTCTCGGTTCATGTC 29608917 Query 61272 GGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331 || ||||| || || ||||| || |||||||| |||||||| || || ||||| | Sbjct 29608916 CGACGTGCAGGTCTCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGCGATCGAGAACAT 29608857 Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGA 61391 |||||| |||||||||||| | || | ||||| ||||||| ||| || | || Sbjct 29608856 CCACTCCGAGATGTACAGTCTCCTGTTAGATACTTACATCAAGGATAATAGAGAGAGGGA 29608797 Query 61392 ACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCG--GAAAGCGGATTGGGCC 61449 | | ||| || ||||||||||| || | | | ||| ||| || | |||||| Sbjct 29608796 TCATCTCTTCCGCGCGATCGAGACGATCCC--CTGCGTCGCGAAGAAGGCCCAATGGGCC 29608739 Query 61450 TTCAATTGGATCACCAGTACAACGGCTACATTTGGTGA-ACGATTGCTGGCATTTGCGGT 61508 || | |||||| | | | || | |||| || | ||| | |||| ||||| Sbjct 29608738 TTGACGTGGATCGACGGATCTCAGG---CCTTTGCCGAGAGGATCG-TGGCGTTTGCTTG 29608683 Query 61509 GGTCGAGGGTGTATTTTTCAGTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTG 61567 || || || |||| ||| || | | | || | | ||||| ||| ||||||| |||| Sbjct 29608682 CGTGGAAGGGATATTCTTCTCCGGTAGCTTCTG-CTCGATCTTCTGGCTGAAGAAGCGTG 29608624 Query 61568 GACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATT 61627 | || ||||| || || |||||| ||| ||| |||| || | ||||||||| |||| | Sbjct 29608623 GGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCGAGAGACGAGGGCCTGCACT 29608564 Query 61628 GTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTG 61687 | || || || | || || | | ||| || | ||||||||||| | Sbjct 29608563 GCGACTTCGC---GTGCCTGATCTACTCCCTCCTGAGGACGAAGCTCTCGGAGGAGCGCG 29608507 Query 61688 TGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGC 61747 || | ||| || | || ||||| ||||| ||| ||| || ||||| | | Sbjct 29608506 TGAGGTCGATCGTGTGCGACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCT-C 29608448 Query 61748 CCGT-CTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCC 61806 |||| | | | | || ||||| ||| ||| ||| ||||||||||| || || || Sbjct 29608447 CCGTGCGCGTTGGTGGGGATGAACCGTGAACTGATGAGTCAGTATATTGAGTTCGTGGCG 29608388 Query 61807 GACCGTCTGTT-GGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGA 61865 || | |||| ||| ||||||| | | | | || | | || || ||||| Sbjct 29608387 GATAGGTTGTTGGGTGCGCTTGGGTACG-GGAAGGTGTACGGTGTGGCGAATCCGTTTGA 29608329 Query 61866 TTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGA 61925 || ||||| |||| ||||| | || || || || || |||||||| | || || || Sbjct 29608328 TTGGATGGAGTTGATCTCGCTTCAGGGGAAAACTAACTTCTTCGAGAAGAGGGTTGGTGA 29608269 Query 61926 CTATCA 61931 ||||| Sbjct 29608268 TTATCA 29608263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397555668558800