Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq3 246 3e-60 seq4 205 1e-47 seq8 127 2e-24 seq6 116 4e-21 >seq3 Length=44396707 Score = 246 bits (272), Expect = 3e-60 Identities = 428/618 (69%), Gaps = 7/618 (1%) Strand=Plus/Plus Query 161895 CAATGCTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCC 161954 |||| | || | ||||||||||| |||||||||||||| |||||||| || ||||| Sbjct 24109906 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 24109965 Query 161955 TCTGGGACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTT 162014 || || || || |||||||| | ||| ||||| || || ||||| || | || Sbjct 24109966 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 24110025 Query 162015 CTTACTTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGT 162074 | | || || | ||||| || || |||||| | || ||| | || || || |||| | Sbjct 24110026 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGCTGGGAAT 24110085 Query 162075 CGCAGGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACAC 162134 || ||| | |||| | ||| || | | |||||| | |||| ||||| | ||| | Sbjct 24110086 TGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAG-AAATAT 24110144 Query 162135 GCTCTACC--AAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAG 162192 | || | || ||||||| ||||||| || |||||| || | | |||| Sbjct 24110145 TTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCC 24110204 Query 162193 GAGGAGACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCT 162252 || || ||||| || ||||| || || ||||| || ||||||| ||||| || |||| Sbjct 24110205 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCT 24110264 Query 162253 TTTAGTAATAAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGG 162312 ||| ||||| | |||||| || ||||||||| | || || || || | ||| | || Sbjct 24110265 TTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGG 24110324 Query 162313 ACAAGTTCTATCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCT 162372 | ||| || | | || | || || ||| | || || |||| || | ||| | || Sbjct 24110325 ATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 24110384 Query 162373 CAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTC 162432 || || ||| |||||||||| ||||| | | ||||||| |||||||| || ||||| || Sbjct 24110385 CAAGAAATTTGTGCAGCGGAAGATCC-GGACTTGAAACTTTCTACACTAAAAATATTCTT 24110443 Query 162433 TTGAATGAAGGTCTTCGTGCATGGTT---GGCACCAGTTGATCAACCGCATGAGAACTTT 162489 || || |||||| |||| | ||| | ||| | | | | || || ||||| ||| || Sbjct 24110444 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 24110503 Query 162490 GTATTCCCTGAGGAAGTT 162507 ||||| ||||||| ||| Sbjct 24110504 ATATTCACTGAGGAGGTT 24110521 >seq4 Length=32756842 Score = 205 bits (226), Expect = 1e-47 Identities = 220/291 (76%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 160130 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 160189 ||||||| |||||| |||||||| || | |||| ||||| |||| ||||| |||| Sbjct 25315233 TATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGATTGCTGTT 25315174 Query 160190 GCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAG 160249 ||||| || ||| | || || || | |||||| ||| | ||||||| | ||||| Sbjct 25315173 GCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCAA 25315114 Query 160250 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTA 160309 || ||| || ||| ||||||||| || |||||||||||||| |||| |||| ||||| Sbjct 25315113 GGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 25315054 Query 160310 TTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTA 160369 || ||||| || ||||| || |||||||| || || |||||| | ||||| ||||| ||| Sbjct 25315053 TTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 25314994 Query 160370 TTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGT 160420 ||||| || | || || |||||||||| | || |||| | ||||||| Sbjct 25314993 TTCGGCGGCTTCCTATTTAGTGCTATGCATAGTTCCTTGGTAATTTCTAGT 25314943 >seq8 Length=44809562 Score = 127 bits (140), Expect = 2e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 160969 TATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGT 161028 || ||||| ||||||||||| ||||| || | ||| || ||||| || ||||||||| Sbjct 31673065 TACGTCCTCGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGT 31673006 Query 161029 GCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCT 161088 ||||||| | ||||| ||||| ||| | ||| |||| || || ||||| || | Sbjct 31673005 TCTTGCTCCAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 31672946 Query 161089 TTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACT 161148 ||||| |||||||| || ||| |||||| || || || || | |||||||| ||| Sbjct 31672945 TTCCTCGATGATGACCAGATTGCTGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACT 31672886 Query 161149 TCTGATGTAACTATT 161163 |||||||| || ||| Sbjct 31672885 TCTGATGTTACCATT 31672871 Score = 120 bits (132), Expect = 3e-22 Identities = 157/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 161746 CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGG 161805 || |||| |||||| || ||||| ||||| | ||| ||||| || || | ||| Sbjct 15117895 CTGTGGGATCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGG 15117954 Query 161806 AATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAA 161865 |||||| || |||||| | |||||| | | || || || ||| | | | | |||||| Sbjct 15117955 GCTTTTGTTGCTCTCCACTGTGCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAA 15118014 Query 161866 CTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGC 161924 |||||||| ||| || | | || ||||| ||||| |||| |||| ||||| |||| Sbjct 15118015 CTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGA 15118073 Query 161925 TGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGG 161959 ||||||||| ||||||||| || |||||||||| Sbjct 15118074 TGTTTTTGTTTCCGTCTTTCTAATTTATCCTCTGG 15118108 >seq6 Length=32494073 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 160969 TATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGT 161028 || ||||| ||||||||||| |||||||| | ||| || ||||| || ||||| ||| Sbjct 22685559 TACGTCCTCGACGCTGCTGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGT 22685500 Query 161029 GCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCT 161088 ||||||| | || || ||||| ||| | ||| | || || || ||||| || | Sbjct 22685499 TCTTGCTCGAGCTGCGCAGGTAAAGTTGTGTCTGGCTCGGTTGACCAGTCTGACCAGAGT 22685440 Query 161089 TTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACT 161148 ||||| |||||||| || ||| ||| |||||||| || |||| || || || ||| Sbjct 22685439 TTCCTCGATGATGACCAGATTGCTGAAGGGTTTGTCCTCACTTGCGCGGCGTACCCTACT 22685380 Query 161149 TCTGATGTAACTAT 161162 |||||||| || || Sbjct 22685379 TCTGATGTTACCAT 22685366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551358459351000