Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq3 273 3e-68 seq4 140 4e-28 seq8 122 1e-22 >seq3 Length=44396707 Score = 273 bits (302), Expect = 3e-68 Identities = 446/638 (70%), Gaps = 7/638 (1%) Strand=Plus/Plus Query 190367 CAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCC 190426 |||| | || | ||||||||||| || |||||||||||| |||||||| || || || Sbjct 24109906 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 24109965 Query 190427 TCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCAGCGATCTTCCGCTT 190486 || |||||||| ||||||||| | ||| || ||||| || || || || || || Sbjct 24109966 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 24110025 Query 190487 CCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCCACATGATGGGTGT 190546 | ||||||| || || || || ||||| ||| | ||||| | || || || |||| | Sbjct 24110026 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGCTGGGAAT 24110085 Query 190547 TGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGTGTGACTGTAGAGAATAC 190606 ||| ||| | ||||| | || || | | || || |||||| |||||||| |||| Sbjct 24110086 TGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AATAT 24110144 Query 190607 TTTGTA--TGAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGACTCTACACAAGAG 190664 ||| || |||| ||||||| ||||| | || || || || | | |||| Sbjct 24110145 TTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCC 24110204 Query 190665 GAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTTGGTGTTGCG 190724 ||||| || ||||| |||||||| || ||||| || ||||| | ||||||||| | ||| Sbjct 24110205 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCT 24110264 Query 190725 TTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTGTGG 190784 || ||||| ||||| || ||||||||| | ||||| || || | ||| | || Sbjct 24110265 TTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGG 24110324 Query 190785 ACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCC 190844 | | | | | || | ||||| ||| | ||||| |||| |||| ||| | ||| Sbjct 24110325 ATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 24110384 Query 190845 CAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTTTACACAAAAAATATACTT 190904 ||||| || | ||||| |||||||| || || || ||||| ||||| |||||||| ||| Sbjct 24110385 CAAGAAATTTGTGCAGCGGAAGATCCGGACTT-GAAACTTTCTACACTAAAAATATTCTT 24110443 Query 190905 TTGAATGAAGGTCTTCGTTCATGGTTGGCACCT---GTTGATCAACCCCATGAGAATTTT 190961 || || |||||| |||| | ||| |||| || | | | || || ||||| || || Sbjct 24110444 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 24110503 Query 190962 GTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 |||| | || || || || ||| | || | | |||| Sbjct 24110504 ATATTCACTGAGGAGGTTTTACCACGTGGAAGCACTCT 24110541 >seq4 Length=32756842 Score = 140 bits (154), Expect = 4e-28 Identities = 198/276 (72%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 189178 TACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGCA-T 189236 || |||| |||||| |||||||| || | |||| ||||| |||| |||||| ||| | Sbjct 25315233 TATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGAT-TGCTGT 25315175 Query 189237 TGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCA 189296 ||| || || || |||||||| | || || || || |||| || ||||||| Sbjct 25315174 TGCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAATTGGTCA 25315115 Query 189297 AGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGT 189356 ||| ||| ||| | | ||||| | || ||| ||| || ||||||| ||| |||| Sbjct 25315114 AGGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGT 25315055 Query 189357 CTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGT 189416 || ||||| ||||||||||| || |||||||| || |||||| | || || || ||||| Sbjct 25315054 ATTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 25314995 Query 189417 CTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTC 189452 ||||| || | || || || |||||| |||| Sbjct 25314994 ATTCGGCGGCTTCCTATTTAGTGCTATGCATAGTTC 25314959 >seq8 Length=44809562 Score = 122 bits (134), Expect = 1e-22 Identities = 181/254 (71%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 190179 TCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAA 190238 || || |||||| || | | | |||||| | | ||| |||| ||||||| | ||| Sbjct 15117856 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGATGTAACTGTGGGATCCTGAAGCACAA 15117915 Query 190239 GGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGG 190298 || ||||| | ||| ||||| || || | ||||||||||| || |||||| | Sbjct 15117916 GGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGGGCTTTTGTTGCTCTCCACTGT 15117975 Query 190299 GCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTAT 190357 |||||| | |||| || || ||| | | | | |||||||| || || ||| || | | Sbjct 15117976 GCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAACTTGCTCGATCTGTTCAAT-T 15118034 Query 190358 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCT 190417 || ||||| ||||| |||| |||| ||||| || | |||||||||| ||||||||| Sbjct 15118035 GCGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGATGTTTTTGTTTCCGTCTTTCT 15118094 Query 190418 CATCTACCCTCTGG 190431 || || ||||||| Sbjct 15118095 AATTTATCCTCTGG 15118108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634059828330000