Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20nigra_20[genbank_20GCA_5F001682895.1_202016-07-12] 2,545 sequences; 402,144,823 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq3 246 3e-60 seq4 183 3e-41 seq8 87.8 2e-12 >seq3 Length=44396707 Score = 246 bits (272), Expect = 3e-60 Identities = 397/568 (70%), Gaps = 2/568 (0%) Strand=Plus/Plus Query 164267 CAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCC 164326 |||| | || | ||||||||||| |||||||| ||||| || || || || || || Sbjct 24109906 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 24109965 Query 164327 TCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATT 164386 || || |||||| ||||||||||| || ||||| || ||||| || || |||| Sbjct 24109966 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 24110025 Query 164387 CCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGT 164446 | || | || ||||||| || ||||| ||| |||| || | || ||| || |||| | Sbjct 24110026 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGCTGGGAAT 24110085 Query 164447 TGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGA-ATA 164505 ||| || | || || | ||||| | || |||||| |||||||||| ||||| | || Sbjct 24110086 TGCCGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGAAATATT 24110145 Query 164506 CTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGG 164565 ||| | |||| ||||||| |||||| || || || | || | ||||| | Sbjct 24110146 TTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCCG 24110205 Query 164566 AAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTT 164625 |||| ||||| || |||||||| || |||||||| ||||| | || ||||| ||||| Sbjct 24110206 AAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCTT 24110265 Query 164626 TCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGA 164685 | |||||| | |||||| || ||||||||| | ||||| || || | || | ||| Sbjct 24110266 TTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGGA 24110325 Query 164686 CAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTC 164745 ||| || ||| || | ||||| || | || || |||| |||| || | || | Sbjct 24110326 TGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCCC 24110385 Query 164746 AGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCC 164805 | || ||| | ||||| || ||||| | | |||| || ||||| || || || || || Sbjct 24110386 AAGAAATTTGTGCAGCGGAAGATCC-GGACTTGAAACTTTCTACACTAAAAATATTCTTT 24110444 Query 164806 TCAATGAAGGACTCCGTGCCTGGATGGC 164833 | || ||||| | || | |||||||| Sbjct 24110445 TAAACGAAGGTATTCGCACTTGGATGGC 24110472 >seq4 Length=32756842 Score = 183 bits (202), Expect = 3e-41 Identities = 219/295 (74%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 160893 TTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATC 160952 || || || |||| ||| || ||||||||| | | | || || || || | ||||| Sbjct 25315239 TTTTGTTATATGGATCGTGATTGGGAACTTAGTTTCTGTCTGGGTATACGTCTTTGGAT- 25315181 Query 160953 TGC-GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTT 161011 ||| ||||||||||| || ||||||| || | ||| || ||| | |||| || | Sbjct 25315180 TGCTGTTGCATATTCAGCTTCTGTTGCAATTGTTATTGCTGTTTTCTTGATCTACCCAAT 25315121 Query 161012 CGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCAT 161071 |||||||| ||| ||| |||||||||| || || ||||||||||| |||||||| || Sbjct 25315120 TGGTCAAGGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTAT 25315061 Query 161072 GCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGC 161131 | |||| || || || || |||||||| || |||||||| || |||||||| ||||| || Sbjct 25315060 GGTTGTATTTCAAGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGC 25315001 Query 161132 TGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCT 161186 |||||| ||||| || | || || || |||||| |||| |||| | |||| Sbjct 25315000 TGGTGTATTCGGCGGCTTCCTATTTAGTGCTATGCATAGTTCCTTGGTAATTTCT 25314946 >seq8 Length=44809562 Score = 87.8 bits (96), Expect = 2e-12 Identities = 170/251 (68%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 164079 TCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 164138 || || |||||| || | | | |||||| | | ||| |||| |||||| | || Sbjct 15117856 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGATGTAACTGTGGGATCCTGAAGCACAA 15117915 Query 164139 GGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGA 164198 || || || | | | ||||| ||||| || || | ||||||||||| || ||||| | Sbjct 15117916 GGAGATTTTACTCGTTGGTGTCAACTAGGCGGTATGTGGGCTTTTGTTGCTCTCCACTGT 15117975 Query 164199 TCTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATC 164258 ||||| | | || ||||| ||| | | | |||||| |||| || ||| | Sbjct 15117976 GCTTTCACATTAATAGGTTTTATGTTGCATTAATTTGAACTTGCTCGATCTGTTCAATTG 15118035 Query 164259 CGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTT 164318 || || || ||||| |||| |||| ||||| |||| ||| ||||| ||| || || Sbjct 15118036 CGACCTTATAATGCAGTTGCATTCTTTGGTCTAATTGATGTTTTTGTTTCCGTCTTTCTA 15118095 Query 164319 ATGTACCCTCT 164329 || || ||||| Sbjct 15118096 ATTTATCCTCT 15118106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559310206378000