Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_
202014-05-27] 32,886 sequences; 488,954,160 total letters
Query= AAMG01000140.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
seq32886 78.8 2e-12
>seq32886
Length=360271
Score = 78.8 bits (86), Expect = 2e-12
Identities = 104/143 (73%), Gaps = 1/143 (1%)
Strand=Plus/Minus
Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251
||| ||||||| |||||| ||| ||||||||||||| || |||| | ||||
Sbjct 83211 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 83152
Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311
|||||||||| | || | ||| | |||||||| | || |||||||||||||||
Sbjct 83151 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 83092
Query 312 AATCAAACTGGGAAATAGCTCGT 334
|| ||| | ||| |||||| ||
Sbjct 83091 AACCAAGATCGGATATAGCTGGT 83069
Score = 78.8 bits (86), Expect = 2e-12
Identities = 104/143 (73%), Gaps = 1/143 (1%)
Strand=Plus/Minus
Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251
||| ||||||| |||||| ||| ||||||||||||| || |||| | ||||
Sbjct 253243 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 253184
Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311
|||||||||| | || | ||| | |||||||| | || |||||||||||||||
Sbjct 253183 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 253124
Query 312 AATCAAACTGGGAAATAGCTCGT 334
|| ||| | ||| |||||| ||
Sbjct 253123 AACCAAGATCGGATATAGCTGGT 253101
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 972480084992
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |