Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_
202014-05-27] 32,886 sequences; 488,954,160 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq736 143 1e-32
seq77 125 4e-27
seq57 125 4e-27
seq22 125 4e-27
seq20 125 4e-27
seq3 125 4e-27
seq2 125 4e-27
seq5 123 1e-26
seq10 118 6e-25
>seq736
Length=7293
Score = 143 bits (158), Expect = 1e-32
Identities = 104/118 (88%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGA-TTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59
||||||||| |||| | |||| | ||||||||||||| |||||| |||||| ||||
Sbjct 1918 GAACCCAAAAACTTGTACTTTCGTGCAAGGTGCCGAGCGGGTCAAAGA-ATAACACCGCC 1860
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1859 CGATCCCTAGTCGGCATAGTTTACGGTTGGGACTACGACGGTATCTGATCGTCTTCGA 1802
>seq77
Length=66831
Score = 125 bits (138), Expect = 4e-27
Identities = 100/118 (85%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
||||||||| ||||||||||||| ||||||||| |||| |||| || |||||| |
Sbjct 7197 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 7139
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 7138 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 7081
>seq57
Length=90757
Score = 125 bits (138), Expect = 4e-27
Identities = 100/118 (85%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
||||||||| ||||||||||||| ||||||||| |||| |||| || |||||| |
Sbjct 89962 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 89904
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 89903 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 89846
>seq22
Length=192287
Score = 125 bits (138), Expect = 4e-27
Identities = 100/118 (85%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
||||||||| ||||||||||||| ||||||||| |||| |||| || |||||| |
Sbjct 17024 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 16966
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 16965 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 16908
Score = 125 bits (138), Expect = 4e-27
Identities = 100/118 (85%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
||||||||| ||||||||||||| ||||||||| |||| |||| || |||||| ||
Sbjct 80365 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCCC 80307
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||| ||||||| |||| |||| |||||| ||||||||||||||||||||||
Sbjct 80306 TGATCCCTACTCGGCATCATTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 80249
Score = 125 bits (138), Expect = 4e-27
Identities = 100/118 (85%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
||||||||| ||||||||||||| ||||||||| |||| |||| || |||||| |
Sbjct 118529 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 118471
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 118470 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 118413
Score = 118 bits (130), Expect = 6e-25
Identities = 98/117 (84%), Gaps = 2/117 (2%)
Strand=Plus/Minus
Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCCC 60
|||||||| ||||||||||||| ||||||||| |||| |||| || |||||| |
Sbjct 151516 AACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGCT 151458
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| | |||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 151457 GATCCCTGGGCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 151401
>seq20
Length=193719
Score = 125 bits (138), Expect = 4e-27
Identities = 100/118 (85%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
||||||||| ||||||||||||| ||||||||| |||| |||| || |||||| |
Sbjct 66247 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 66189
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 66188 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 66131
Score = 125 bits (138), Expect = 4e-27
Identities = 100/118 (85%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
||||||||| ||||||||||||| ||||||||| |||| |||| || |||||| |
Sbjct 98583 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 98525
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 98524 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 98467
Score = 125 bits (138), Expect = 4e-27
Identities = 100/118 (85%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
||||||||| ||||||||||||| ||||||||| |||| |||| || |||||| |
Sbjct 103080 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 103022
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 103021 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 102964
Score = 75.2 bits (82), Expect = 6e-12
Identities = 90/120 (75%), Gaps = 3/120 (3%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA--AAATGA-TAACATCG 57
||||||||| |||||| |||| || ||| | || ||||||| |||| | | || |
Sbjct 124499 GAACCCAAAAACTTTGGTTTCCCGGAAGCTTCCATTCGAGTCATGAAATTAGTTACTCAG 124440
Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||| || || ||||| ||||| ||||| |||| | ||||||||||||| ||||||
Sbjct 124439 AATGATCGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 124380
>seq3
Length=64984695
Score = 125 bits (138), Expect = 4e-27
Identities = 100/118 (85%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59
||||||||| ||||||||||||| ||||||||| ||| ||||| || |||||| |
Sbjct 24562559 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 24562617
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 24562618 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 24562675
>seq2
Length=52886895
Score = 125 bits (138), Expect = 4e-27
Identities = 100/118 (85%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
||||||||| ||||||||||||| ||||||||| |||| |||| || |||||| |
Sbjct 45051025 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 45050967
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 45050966 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 45050909
>seq5
Length=46902585
Score = 123 bits (136), Expect = 1e-26
Identities = 99/117 (85%), Gaps = 2/117 (2%)
Strand=Plus/Plus
Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAG-TCAAAATGATAACATCGCCC 60
|||||||| ||||||||||||| ||||||||| | | | || ||| | |||||| |
Sbjct 32699045 AACCCAAAAACTTTGATTTCTCATAAGGTGCCAACGGCGTTCTAAAAG-CAACATCCGCT 32699103
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||||||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 32699104 GATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 32699160
>seq10
Length=550871
Score = 118 bits (130), Expect = 6e-25
Identities = 96/114 (84%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
||||||||| ||||||||||||| ||||||||| |||| |||| || |||||| |
Sbjct 88608 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 88550
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCT 113
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||
Sbjct 88549 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCT 88496
Score = 116 bits (128), Expect = 2e-24
Identities = 98/118 (83%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
||||||||| ||||||||||||| ||||||||| |||| |||| || |||||| |
Sbjct 76483 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 76425
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| | ||| |||| |||||| ||||||||||||| ||||||||
Sbjct 76424 TGATCCCTGGTCGGCATCGATTATGGTTGAGACTAGGACGGTATCTGATTGTCTTCGA 76367
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278314167540
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |