Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq736 143 1e-32 seq77 125 4e-27 seq57 125 4e-27 seq22 125 4e-27 seq20 125 4e-27 seq3 125 4e-27 seq2 125 4e-27 seq5 123 1e-26 seq10 118 6e-25 >seq736 Length=7293 Score = 143 bits (158), Expect = 1e-32 Identities = 104/118 (88%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGA-TTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59 ||||||||| |||| | |||| | ||||||||||||| |||||| |||||| |||| Sbjct 1918 GAACCCAAAAACTTGTACTTTCGTGCAAGGTGCCGAGCGGGTCAAAGA-ATAACACCGCC 1860 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1859 CGATCCCTAGTCGGCATAGTTTACGGTTGGGACTACGACGGTATCTGATCGTCTTCGA 1802 >seq77 Length=66831 Score = 125 bits (138), Expect = 4e-27 Identities = 100/118 (85%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||| |||| |||| || |||||| | Sbjct 7197 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 7139 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 7138 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 7081 >seq57 Length=90757 Score = 125 bits (138), Expect = 4e-27 Identities = 100/118 (85%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||| |||| |||| || |||||| | Sbjct 89962 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 89904 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 89903 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 89846 >seq22 Length=192287 Score = 125 bits (138), Expect = 4e-27 Identities = 100/118 (85%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||| |||| |||| || |||||| | Sbjct 17024 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 16966 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 16965 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 16908 Score = 125 bits (138), Expect = 4e-27 Identities = 100/118 (85%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||| |||| |||| || |||||| || Sbjct 80365 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCCC 80307 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||| ||||||| |||| |||| |||||| |||||||||||||||||||||| Sbjct 80306 TGATCCCTACTCGGCATCATTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 80249 Score = 125 bits (138), Expect = 4e-27 Identities = 100/118 (85%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||| |||| |||| || |||||| | Sbjct 118529 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 118471 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 118470 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 118413 Score = 118 bits (130), Expect = 6e-25 Identities = 98/117 (84%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCCC 60 |||||||| ||||||||||||| ||||||||| |||| |||| || |||||| | Sbjct 151516 AACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGCT 151458 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| | |||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 151457 GATCCCTGGGCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 151401 >seq20 Length=193719 Score = 125 bits (138), Expect = 4e-27 Identities = 100/118 (85%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||| |||| |||| || |||||| | Sbjct 66247 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 66189 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 66188 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 66131 Score = 125 bits (138), Expect = 4e-27 Identities = 100/118 (85%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||| |||| |||| || |||||| | Sbjct 98583 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 98525 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 98524 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 98467 Score = 125 bits (138), Expect = 4e-27 Identities = 100/118 (85%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||| |||| |||| || |||||| | Sbjct 103080 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 103022 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 103021 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 102964 Score = 75.2 bits (82), Expect = 6e-12 Identities = 90/120 (75%), Gaps = 3/120 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA--AAATGA-TAACATCG 57 ||||||||| |||||| |||| || ||| | || ||||||| |||| | | || | Sbjct 124499 GAACCCAAAAACTTTGGTTTCCCGGAAGCTTCCATTCGAGTCATGAAATTAGTTACTCAG 124440 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| || || ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 124439 AATGATCGCTGGTTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 124380 >seq3 Length=64984695 Score = 125 bits (138), Expect = 4e-27 Identities = 100/118 (85%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||| ||| ||||| || |||||| | Sbjct 24562559 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 24562617 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 24562618 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 24562675 >seq2 Length=52886895 Score = 125 bits (138), Expect = 4e-27 Identities = 100/118 (85%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||| |||| |||| || |||||| | Sbjct 45051025 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 45050967 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 45050966 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 45050909 >seq5 Length=46902585 Score = 123 bits (136), Expect = 1e-26 Identities = 99/117 (85%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAG-TCAAAATGATAACATCGCCC 60 |||||||| ||||||||||||| ||||||||| | | | || ||| | |||||| | Sbjct 32699045 AACCCAAAAACTTTGATTTCTCATAAGGTGCCAACGGCGTTCTAAAAG-CAACATCCGCT 32699103 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 32699104 GATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 32699160 >seq10 Length=550871 Score = 118 bits (130), Expect = 6e-25 Identities = 96/114 (84%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||| |||| |||| || |||||| | Sbjct 88608 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 88550 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCT 113 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||| Sbjct 88549 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCT 88496 Score = 116 bits (128), Expect = 2e-24 Identities = 98/118 (83%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||| |||| |||| || |||||| | Sbjct 76483 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 76425 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| | ||| |||| |||||| ||||||||||||| |||||||| Sbjct 76424 TGATCCCTGGTCGGCATCGATTATGGTTGAGACTAGGACGGTATCTGATTGTCTTCGA 76367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278314167540