Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_
202014-05-27] 32,886 sequences; 488,954,160 total letters
Query= AAMG01000383.1
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
seq3 230 6e-58
seq32886 187 6e-45
seq628 98.7 3e-18
seq4 89.7 1e-15
seq2 78.8 2e-12
>seq3
Length=64984695
Score = 230 bits (254), Expect = 6e-58
Identities = 297/409 (73%), Gaps = 2/409 (0%)
Strand=Plus/Plus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| |||
Sbjct 46735803 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 46735862
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||||| |||||| | |||||||||||||| | ||| || | | |||| | | ||
Sbjct 46735863 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 46735922
Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182
||||||| ||||| |||| ||| || | | ||| | || |||| | ||
Sbjct 46735923 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTTGAGTACGGTAGG 46735982
Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242
|| | |||||| | ||| ||| |||||||||||||| || | | ||||||||| ||
Sbjct 46735983 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 46736042
Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302
|||| ||| | ||||| |||||||| || | |||||||| ||||||| || |
Sbjct 46736043 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGG 46736102
Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362
|||||||||||| ||||||| ||| |||||||| ||||| | || | | |
Sbjct 46736103 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 46736162
Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
|| || || ||||||||||||| |||| ||||||||||| |||
Sbjct 46736163 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 46736211
Score = 104 bits (114), Expect = 6e-20
Identities = 83/100 (83%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67
|| ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| |
Sbjct 30223737 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGGGGCAAGTG 30223796
Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTT 107
|| ||||||| ||| ||||||||| | || ||||||||
Sbjct 30223797 TTCTTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGTT 30223836
>seq32886
Length=360271
Score = 187 bits (206), Expect = 6e-45
Identities = 245/335 (73%), Gaps = 12/335 (4%)
Strand=Plus/Plus
Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67
|| ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| |
Sbjct 355608 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGGGGCAAGTG 355667
Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTT----GTGTAAGACAGGTGTG 123
|| ||||||| ||| ||||||||| | || |||||||| | || || || ||
Sbjct 355668 TTCTTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGTTCATCGGGTT-GAAAG---TG 355723
Query 124 AAATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182
||| | | | || ||| | | ||| || | || | ||| ||||| | ||||
Sbjct 355724 AAAGTC---GTCAAAAAGTGGCGGAATGCTTTCGAAACCACTGAACTTGAGTGAGACAGA 355780
Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242
|| | |||||||| | ||| || ||||||| ||| | | |||||| |||| |
Sbjct 355781 GGAGAGTGGAATTTCGTGTGGAGGGGTGAAATCTACGGATCTACGAAGGAACGCCAAAAG 355840
Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302
|||||||||| | ||||| || |||||| || ||||||| |||||||| ||| |
Sbjct 355841 CGAAGGCAGCTCTCTGGGTCTCTACCGACGCTGGTGTGCGAAAGCATGGGGAGCGAACGG 355900
Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337
|||||||||||||||||||||| ||| ||||||||
Sbjct 355901 GATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 355935
>seq628
Length=9137
Score = 98.7 bits (108), Expect = 3e-18
Identities = 131/181 (72%), Gaps = 2/181 (1%)
Strand=Plus/Minus
Query 231 GAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTG 290
||||||||| |||||| ||| | ||||| |||||||| || | |||||||| |
Sbjct 4821 GAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAG 4762
Query 291 GGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGT 350
|||||| || ||||||||||||| ||||||| ||| |||||||| ||||| |
Sbjct 4761 GGGAGCGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGC 4702
Query 351 TGGGGATTTACTTCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATA 408
|| | | | || || || ||||||||||||| |||| ||||||||||| ||
Sbjct 4701 TGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 4642
Query 409 C 409
|
Sbjct 4641 C 4641
>seq4
Length=53719093
Score = 89.7 bits (98), Expect = 1e-15
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 24 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTG 83
|||||| |||||||||||||||||||||| ||| ||||||||||| |||||| | ||
Sbjct 42837394 CTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCGGAATGATTG 42837335
Query 84 GGCGTAAAGCGT 95
||||||||||||
Sbjct 42837334 GGCGTAAAGCGT 42837323
Score = 80.6 bits (88), Expect = 7e-13
Identities = 82/107 (77%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 231 GAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTG 290
||||||||| |||||| ||| | ||||| |||||||| || | |||||||| |
Sbjct 21790533 GAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAG 21790474
Query 291 GGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337
|||||| || |||||||||||| ||||||| ||| ||||||||
Sbjct 21790473 GGGAGCGAATGAGATTAGATACCCCAGTAGTCCTAGCCGTAAACGAT 21790427
>seq2
Length=52886895
Score = 78.8 bits (86), Expect = 2e-12
Identities = 51/56 (91%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 282 GAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337
|||||| |||||||| ||| ||||||||||||||||||||||| ||| ||||||||
Sbjct 27861625 GAAAGCATGGGGAGCGAACGGGATTAGATACCCTGGTAGTCCATGCCTTAAACGAT 27861570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1289175902144
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |