Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_
202014-05-27] 32,886 sequences; 488,954,160 total letters
Query= AAMG01000567.1
Length=197
Score E
Sequences producing significant alignments: (Bits) Value
seq216 93.3 4e-17
seq32886 86.0 7e-15
seq8 86.0 7e-15
seq6 73.4 4e-11
>seq216
Length=33545
Score = 93.3 bits (102), Expect = 4e-17
Identities = 87/110 (79%), Gaps = 2/110 (2%)
Strand=Plus/Minus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| |
Sbjct 30974 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 30917
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| || ||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 30916 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 30867
>seq32886
Length=360271
Score = 86.0 bits (94), Expect = 7e-15
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83
||||| |||||| || | || || ||||||| |||||||||| ||| || | |||
Sbjct 82075 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 82016
Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123
||||| |||||| |||||| |||||||||||| || ||||
Sbjct 82015 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 81976
Score = 86.0 bits (94), Expect = 7e-15
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83
||||| |||||| || | || || ||||||| |||||||||| ||| || | |||
Sbjct 252107 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 252048
Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123
||||| |||||| |||||| |||||||||||| || ||||
Sbjct 252047 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 252008
>seq8
Length=41758685
Score = 86.0 bits (94), Expect = 7e-15
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83
||||| |||||| || | || || ||||||| |||||||||| ||| || | |||
Sbjct 33277936 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 33277995
Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123
||||| |||||| |||||| |||||||||||| || ||||
Sbjct 33277996 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 33278035
>seq6
Length=39822476
Score = 73.4 bits (80), Expect = 4e-11
Identities = 79/104 (76%), Gaps = 2/104 (2%)
Strand=Plus/Plus
Query 86 ACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGGGC 145
||| |||||| | ||| |||||||||||| || ||| || | || ||| ||| | |
Sbjct 26190492 ACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGAGGTGCCCCCTCACAAAGGGG--GTC 26190549
Query 146 GCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
|||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 26190550 GCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 26190593
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531030768644
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |