Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_
202014-05-27] 32,886 sequences; 488,954,160 total letters
Query= AAMG01000599.1
Length=180
Score E
Sequences producing significant alignments: (Bits) Value
seq32886 87.8 2e-15
seq216 87.8 2e-15
seq8 87.8 2e-15
seq6 87.8 2e-15
>seq32886
Length=360271
Score = 87.8 bits (96), Expect = 2e-15
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | ||||||||||||||||||||||| ||||||| || | || ||
Sbjct 81943 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 81884
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
|||||| || |||| |||||||||||| |||| || ||
Sbjct 81883 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCAA 81846
Score = 87.8 bits (96), Expect = 2e-15
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | ||||||||||||||||||||||| ||||||| || | || ||
Sbjct 251975 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 251916
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
|||||| || |||| |||||||||||| |||| || ||
Sbjct 251915 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCAA 251878
>seq216
Length=33545
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 30914 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 30855
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 30854 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 30809
>seq8
Length=41758685
Score = 87.8 bits (96), Expect = 2e-15
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | ||||||||||||||||||||||| ||||||| || | || ||
Sbjct 33278068 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 33278127
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
|||||| || |||| |||||||||||| |||| || ||
Sbjct 33278128 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCAA 33278165
>seq6
Length=39822476
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 26190546 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 26190605
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 26190606 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 26190651
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476648099566
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |