Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_
202014-05-27] 32,886 sequences; 488,954,160 total letters
Query= AAMG01000750.1
Length=102
Score E
Sequences producing significant alignments: (Bits) Value
seq2498 89.7 2e-16
seq395 89.7 2e-16
seq22 89.7 2e-16
seq20 89.7 2e-16
seq10 89.7 2e-16
seq7 89.7 2e-16
seq3 89.7 2e-16
seq2 89.7 2e-16
seq77 75.2 5e-12
seq2954 71.6 6e-11
>seq2498
Length=1214
Score = 89.7 bits (98), Expect = 2e-16
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59
||||||||||||||| |||||||||| |||||||||||| |||| ||||||||||||||
Sbjct 1064 GGAAAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 1122
>seq395
Length=18076
Score = 89.7 bits (98), Expect = 2e-16
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59
||||||||||||||| |||||||||| |||||||||||| |||| ||||||||||||||
Sbjct 8557 GGAAAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 8615
>seq22
Length=192287
Score = 89.7 bits (98), Expect = 2e-16
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59
||||||||||||||| |||||||||| |||||||||||| |||| ||||||||||||||
Sbjct 57158 GGAAAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 57216
Score = 89.7 bits (98), Expect = 2e-16
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59
||||||||||||||| |||||||||| |||||||||||| |||| ||||||||||||||
Sbjct 153125 GGAAAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 153183
Score = 84.2 bits (92), Expect = 1e-14
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59
||||||||||||||| ||||||| || |||||||||||| |||| ||||||||||||||
Sbjct 18556 GGAAAAGAAACTAACAAGGATTCGCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 18614
>seq20
Length=193719
Score = 89.7 bits (98), Expect = 2e-16
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59
||||||||||||||| |||||||||| |||||||||||| |||| ||||||||||||||
Sbjct 67610 GGAAAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 67668
Score = 89.7 bits (98), Expect = 2e-16
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59
||||||||||||||| |||||||||| |||||||||||| |||| ||||||||||||||
Sbjct 104443 GGAAAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 104501
>seq10
Length=550871
Score = 89.7 bits (98), Expect = 2e-16
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59
||||||||||||||| |||||||||| |||||||||||| |||| ||||||||||||||
Sbjct 90027 GGAAAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 90085
Score = 82.4 bits (90), Expect = 4e-14
Identities = 51/55 (93%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCC 55
||||||||||||||| |||||||||| |||||||||||| |||| ||||||||||
Sbjct 78029 GGAAAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCC 78083
Score = 75.2 bits (82), Expect = 5e-12
Identities = 52/59 (88%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59
|||||||||||||| |||||||||| |||||||| ||| || | ||||||||||||||
Sbjct 14916 GGAAAAGAAACTAATAAGGATTCCCTTAGTAACGGAGAGCGAGCCGGGAAGAGCCCAGC 14974
>seq7
Length=48366697
Score = 89.7 bits (98), Expect = 2e-16
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59
||||||||||||||| |||||||||| |||||||||||| |||| ||||||||||||||
Sbjct 13354262 GGAAAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 13354320
>seq3
Length=64984695
Score = 89.7 bits (98), Expect = 2e-16
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59
||||||||||||||| |||||||||| |||||||||||| |||| ||||||||||||||
Sbjct 24561196 GGAAAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 24561138
>seq2
Length=52886895
Score = 89.7 bits (98), Expect = 2e-16
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59
||||||||||||||| |||||||||| |||||||||||| |||| ||||||||||||||
Sbjct 45052388 GGAAAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGC 45052446
Score = 84.2 bits (92), Expect = 1e-14
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59
||||||||||||||| |||||||||| |||||||||||| |||| ||||||||| ||||
Sbjct 45060455 GGAAAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGCGAACCGGGAAGAGCTCAGC 45060513
>seq77
Length=66831
Score = 75.2 bits (82), Expect = 5e-12
Identities = 52/59 (88%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59
||||||||||||||| |||||||||| ||||| |||||| |||| ||||||||| |||
Sbjct 8494 GGAAAAGAAACTAACAAGGATTCCCTTAGTAATGGCGAGCGAACCAGGAAGAGCCTAGC 8552
>seq2954
Length=1087
Score = 71.6 bits (78), Expect = 6e-11
Identities = 51/59 (86%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGC 59
|||||| ||| |||| |||||||||| |||||||| ||| || | ||||||||||||||
Sbjct 891 GGAAAACAAAATAACAAGGATTCCCTTAGTAACGGAGAGCGAGCCGGGAAGAGCCCAGC 833
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 230328966240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |