Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_
202014-05-27] 32,886 sequences; 488,954,160 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq628 475 1e-131
seq32886 197 4e-48
seq3 150 5e-34
seq6 125 2e-26
seq5 98.7 3e-18
seq9 96.9 1e-17
seq22 80.6 8e-13
seq2 75.2 3e-11
>seq628
Length=9137
Score = 475 bits (526), Expect = 1e-131
Identities = 406/497 (82%), Gaps = 3/497 (1%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 4643 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 4584
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
|||||||||||||| |||| |||||||||||||||| |||||||| | || ||||
Sbjct 4583 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 4524
Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180
| || | ||||| | || |||||| || | ||||||| ||||||| |||||||||
Sbjct 4523 TTGAAAGAGAGGGGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 4466
Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240
|||||| ||| || ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 4465 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 4406
Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300
|| | || |||| || || || | |||||||||||| || ||||||||||||| |||
Sbjct 4405 CACCGTTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 4346
Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360
|||||||| ||||||||||||||||| ||||| |||||||||||||||||| | ||
Sbjct 4345 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 4286
Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420
|||||| |||| |||||||| ||| || ||| ||| || ||||||||||||||
Sbjct 4285 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 4226
Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479
|| |||||||||| || ||||||| ||||||||||||||||| | |||| ||| |
Sbjct 4225 CAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 4166
Query 480 CGGTGAATACGTTCCCG 496
|||||||| ||||||||
Sbjct 4165 CGGTGAATTCGTTCCCG 4149
>seq32886
Length=360271
Score = 197 bits (218), Expect = 4e-48
Identities = 186/236 (79%), Gaps = 1/236 (0%)
Strand=Plus/Plus
Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326
||||||| |||| | || ||||||||||||||| |||||||| || |||| ||||||||
Sbjct 356538 GACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 356597
Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386
||||| |||||||||||||||||| | ||||| ||| ||| | | | ||| |
Sbjct 356598 GGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGA 356657
Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446
|| ||| || |||| | ||||||||||||||| ||||||||||| | ||||||
Sbjct 356658 GCGAAT-CCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGT 356716
Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502
|||||||||||||||||| ||||||||||| ||||||||| || |||| ||||
Sbjct 356717 TGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 356772
Score = 181 bits (200), Expect = 3e-43
Identities = 182/234 (78%), Gaps = 17/234 (7%)
Strand=Plus/Plus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 356003 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 356062
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
|||||||||||||| ||||||| |||||||||||| ||||||| | ||| |
Sbjct 356063 GTGGTTTAATTCGATACAACGCGCAGAACCTTACCAGCCCTTGACA---TATGAAC---- 356115
Query 121 TAGAGATAGAGGTTTCCCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTG 173
|||| | | ||| ||| || || || | ||||||| ||||||| ||
Sbjct 356116 --GAGA-AACCCTATCCTTAACGGGATGGTACTGACTTTCATACAGGTGCTGCATGGCTG 356172
Query 174 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227
||||||||||||||||||||||||| |||||||||| |||||||| ||||||
Sbjct 356173 TCGTCAGCTCGTGTCGTGAGATGTTTGGTTAAGTCCTATAACGAGCGAAACCCT 356226
>seq3
Length=64984695
Score = 150 bits (166), Expect = 5e-34
Identities = 121/145 (83%), Gaps = 1/145 (1%)
Strand=Plus/Plus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| |||||||||||||||||||||||| || |||||||||||||||||
Sbjct 46736209 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGGCCACACAAGCGGTGGAGCAT 46736268
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
|||||||||||||| |||| |||||||||||||||| | |||||||| | || ||||
Sbjct 46736269 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGAGCTTGACATGCCGCGAATCCTC 46736328
Query 121 TAGAGATAGAGGTTTCCCCTTCGGG 145
| || | ||||| | ||||||||
Sbjct 46736329 TTGAAAGAGAGGGGT-GCCTTCGGG 46736352
>seq6
Length=39822476
Score = 125 bits (138), Expect = 2e-26
Identities = 95/112 (85%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 271 GCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTT 330
|||||||| || | ||||||||||| ||| |||||||| ||||||||||||||||| | |
Sbjct 8321985 GCCGGTGAAAAGCTGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCTCT 8322044
Query 331 GGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGG 382
|||| |||||||||||||||||| | |||||||| |||| ||||||||
Sbjct 8322045 GGGCGACACACGTGCTACAATGGCCGGGACAAAGGGTCGCGATCCCGCGAGG 8322096
Score = 84.2 bits (92), Expect = 7e-14
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 318 CCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCG 377
||||||||| ||||| |||||||||||||||||| | |||||||| | || |||
Sbjct 8321453 CCCCTTATGCCATGGGCGACACACGTGCTACAATGGCCGGGACAAAGGGTCGTGATCCCG 8321512
Query 378 CGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAAC 431
||||| ||| || | | ||| || |||||||||||||| || |||||||
Sbjct 8321513 CGAGGGTGAGCTAACTCTAAAAACCCGTCCTCAGTTCGGATTGCAGGCTGCAAC 8321566
Score = 82.4 bits (90), Expect = 2e-13
Identities = 70/85 (82%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 412 TTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCA 471
||||||||| || |||||||||| ||| ||||||| ||||| ||||||||||| | |||
Sbjct 8320634 TTCGGATTGCAGGCTGCAACTCGCCTACATGAAGCCGGAATTGCTAGTAATCGCCGGTCA 8320693
Query 472 G-CATGCTACGGTGAATACGTTCCC 495
| ||| | |||||||| | |||||
Sbjct 8320694 GCCATACGGCGGTGAATTCTTTCCC 8320718
>seq5
Length=46902585
Score = 98.7 bits (108), Expect = 3e-18
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215
||||||| ||||||| ||||||||||||||||||||||||||| |||||||||| |||
Sbjct 39977657 ACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTTAAGTCCTATAAC 39977598
Query 216 GAGCGCAACCCT 227
||||| ||||||
Sbjct 39977597 GAGCGAAACCCT 39977586
>seq9
Length=54679868
Score = 96.9 bits (106), Expect = 1e-17
Identities = 79/96 (82%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 407 CTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTA 466
||||||||||||| | ||||||||||| | |||||| ||||||| ||||||||||
Sbjct 2566887 CTCAGTTCGGATTATTCTCTGCAACTCGGGAACATGAAGTTGGAATCACTAGTAATCGCG 2566828
Query 467 GATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502
||||||||||| ||||||||| || |||| ||||
Sbjct 2566827 GATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 2566792
>seq22
Length=192287
Score = 80.6 bits (88), Expect = 8e-13
Identities = 81/103 (79%), Gaps = 3/103 (3%)
Strand=Plus/Plus
Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGG--GGACCCGCACAAGCGGTGGAGCATGTGG 64
||||||| ||||||| |||||||||||||| || | | ||| || ||||||| || ||
Sbjct 118545 CGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCAC-CACCAGGAGTGGAGCCTGCGG 118603
Query 65 TTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107
|||||| || |||| || ||| ||||||||||| |||||
Sbjct 118604 CTTAATTTGACTCAACACGGGGAAACTTACCAAATCCAGACAT 118646
>seq2
Length=52886895
Score = 75.2 bits (82), Expect = 3e-11
Identities = 66/80 (83%), Gaps = 3/80 (4%)
Strand=Plus/Plus
Query 20 CTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAA 79
|| ||||||||||| |||| || |||||| |||||||| ||||||||||||| || | |
Sbjct 25228143 CTAAAAGGAATTGATGGGGGCCTGCACAAACGGTGGAGTATGTGGTTTAATTTGATAC-A 25228201
Query 80 CGCGAAGAACCTTACCAAAT 99
|||| |||||||| ||||
Sbjct 25228202 CGCG--GAACCTTAATAAAT 25228219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1503505394560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |