Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq628 475 1e-131 seq32886 197 4e-48 seq3 150 5e-34 seq6 125 2e-26 seq5 98.7 3e-18 seq9 96.9 1e-17 seq22 80.6 8e-13 seq2 75.2 3e-11 >seq628 Length=9137 Score = 475 bits (526), Expect = 1e-131 Identities = 406/497 (82%), Gaps = 3/497 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 4643 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 4584 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 4583 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 4524 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | || |||||| || | ||||||| ||||||| ||||||||| Sbjct 4523 TTGAAAGAGAGGGGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 4466 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 4465 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 4406 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || | || |||| || || || | |||||||||||| || ||||||||||||| ||| Sbjct 4405 CACCGTTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 4346 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| ||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 4345 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 4286 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| |||||||| ||| || ||| ||| || |||||||||||||| Sbjct 4285 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 4226 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 || |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | Sbjct 4225 CAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 4166 Query 480 CGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 4165 CGGTGAATTCGTTCCCG 4149 >seq32886 Length=360271 Score = 197 bits (218), Expect = 4e-48 Identities = 186/236 (79%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 356538 GACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 356597 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| |||||||||||||||||| | ||||| ||| ||| | | | ||| | Sbjct 356598 GGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGA 356657 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446 || ||| || |||| | ||||||||||||||| ||||||||||| | |||||| Sbjct 356658 GCGAAT-CCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGT 356716 Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 |||||||||||||||||| ||||||||||| ||||||||| || |||| |||| Sbjct 356717 TGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 356772 Score = 181 bits (200), Expect = 3e-43 Identities = 182/234 (78%), Gaps = 17/234 (7%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct 356003 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 356062 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||| |||||||||||| ||||||| | ||| | Sbjct 356063 GTGGTTTAATTCGATACAACGCGCAGAACCTTACCAGCCCTTGACA---TATGAAC---- 356115 Query 121 TAGAGATAGAGGTTTCCCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTG 173 |||| | | ||| ||| || || || | ||||||| ||||||| || Sbjct 356116 --GAGA-AACCCTATCCTTAACGGGATGGTACTGACTTTCATACAGGTGCTGCATGGCTG 356172 Query 174 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||||||||||||||||||||||||| |||||||||| |||||||| |||||| Sbjct 356173 TCGTCAGCTCGTGTCGTGAGATGTTTGGTTAAGTCCTATAACGAGCGAAACCCT 356226 >seq3 Length=64984695 Score = 150 bits (166), Expect = 5e-34 Identities = 121/145 (83%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| || ||||||||||||||||| Sbjct 46736209 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGGCCACACAAGCGGTGGAGCAT 46736268 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| | |||||||| | || |||| Sbjct 46736269 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGAGCTTGACATGCCGCGAATCCTC 46736328 Query 121 TAGAGATAGAGGTTTCCCCTTCGGG 145 | || | ||||| | |||||||| Sbjct 46736329 TTGAAAGAGAGGGGT-GCCTTCGGG 46736352 >seq6 Length=39822476 Score = 125 bits (138), Expect = 2e-26 Identities = 95/112 (85%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 271 GCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTT 330 |||||||| || | ||||||||||| ||| |||||||| ||||||||||||||||| | | Sbjct 8321985 GCCGGTGAAAAGCTGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCTCT 8322044 Query 331 GGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGG 382 |||| |||||||||||||||||| | |||||||| |||| |||||||| Sbjct 8322045 GGGCGACACACGTGCTACAATGGCCGGGACAAAGGGTCGCGATCCCGCGAGG 8322096 Score = 84.2 bits (92), Expect = 7e-14 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 318 CCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCG 377 ||||||||| ||||| |||||||||||||||||| | |||||||| | || ||| Sbjct 8321453 CCCCTTATGCCATGGGCGACACACGTGCTACAATGGCCGGGACAAAGGGTCGTGATCCCG 8321512 Query 378 CGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAAC 431 ||||| ||| || | | ||| || |||||||||||||| || ||||||| Sbjct 8321513 CGAGGGTGAGCTAACTCTAAAAACCCGTCCTCAGTTCGGATTGCAGGCTGCAAC 8321566 Score = 82.4 bits (90), Expect = 2e-13 Identities = 70/85 (82%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 412 TTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCA 471 ||||||||| || |||||||||| ||| ||||||| ||||| ||||||||||| | ||| Sbjct 8320634 TTCGGATTGCAGGCTGCAACTCGCCTACATGAAGCCGGAATTGCTAGTAATCGCCGGTCA 8320693 Query 472 G-CATGCTACGGTGAATACGTTCCC 495 | ||| | |||||||| | ||||| Sbjct 8320694 GCCATACGGCGGTGAATTCTTTCCC 8320718 >seq5 Length=46902585 Score = 98.7 bits (108), Expect = 3e-18 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||| ||||||||||||||||||||||||||| |||||||||| ||| Sbjct 39977657 ACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTTAAGTCCTATAAC 39977598 Query 216 GAGCGCAACCCT 227 ||||| |||||| Sbjct 39977597 GAGCGAAACCCT 39977586 >seq9 Length=54679868 Score = 96.9 bits (106), Expect = 1e-17 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 407 CTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTA 466 ||||||||||||| | ||||||||||| | |||||| ||||||| |||||||||| Sbjct 2566887 CTCAGTTCGGATTATTCTCTGCAACTCGGGAACATGAAGTTGGAATCACTAGTAATCGCG 2566828 Query 467 GATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 ||||||||||| ||||||||| || |||| |||| Sbjct 2566827 GATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 2566792 >seq22 Length=192287 Score = 80.6 bits (88), Expect = 8e-13 Identities = 81/103 (79%), Gaps = 3/103 (3%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGG--GGACCCGCACAAGCGGTGGAGCATGTGG 64 ||||||| ||||||| |||||||||||||| || | | ||| || ||||||| || || Sbjct 118545 CGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCAC-CACCAGGAGTGGAGCCTGCGG 118603 Query 65 TTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 |||||| || |||| || ||| ||||||||||| ||||| Sbjct 118604 CTTAATTTGACTCAACACGGGGAAACTTACCAAATCCAGACAT 118646 >seq2 Length=52886895 Score = 75.2 bits (82), Expect = 3e-11 Identities = 66/80 (83%), Gaps = 3/80 (4%) Strand=Plus/Plus Query 20 CTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAA 79 || ||||||||||| |||| || |||||| |||||||| ||||||||||||| || | | Sbjct 25228143 CTAAAAGGAATTGATGGGGGCCTGCACAAACGGTGGAGTATGTGGTTTAATTTGATAC-A 25228201 Query 80 CGCGAAGAACCTTACCAAAT 99 |||| |||||||| |||| Sbjct 25228202 CGCG--GAACCTTAATAAAT 25228219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503505394560