Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_
202014-05-27] 32,886 sequences; 488,954,160 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq216 183 6e-44
seq5 125 1e-26
seq32886 102 2e-19
seq14421 102 2e-19
seq8 102 2e-19
seq7 73.4 8e-11
>seq216
Length=33545
Score = 183 bits (202), Expect = 6e-44
Identities = 180/230 (78%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||||||||||
Sbjct 30434 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 30375
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
| ||||| | |||| | ||| ||| | || | | |||||||||||| |||||
Sbjct 30374 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 30316
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| |||
Sbjct 30315 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 30256
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| || ||||| ||||||||||| ||||||||||| ||| || ||||||
Sbjct 30255 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 30206
>seq5
Length=46902585
Score = 125 bits (138), Expect = 1e-26
Identities = 105/129 (81%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270
|||||||||||| |||| | |||||||| | |||| | ||| ||||||||||||| ||
Sbjct 20578163 AGTGCAAAGGCAGAAGGAAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAATC 20578222
Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330
|| |||| ||||||| ||||| || ||||| | ||||||||| ||||||||||| ||
Sbjct 20578223 GGCCTTAGTGATCCGATGGTGCGGAGTGGAAGGACCGTCGCTCAACGGATAAAAGTTATT 20578282
Query 331 CTGGGGATA 339
|| ||||||
Sbjct 20578283 CTAGGGATA 20578291
>seq32886
Length=360271
Score = 102 bits (112), Expect = 2e-19
Identities = 163/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
||||||| || || ||| ||||| ||||||||| |||||| |||||||||||||||
Sbjct 81494 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 81435
Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGG 228
| | ||| || |||| | | || | ||| | || | || || | |||
Sbjct 81434 TGTGCGAAGGTAGGCTCAA---GCAAAGATTC--TGCTCGTGAGCGTAATGGTATAAGCC 81380
Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288
|| |||||| || ||| | ||| | ||| |||||||||||| | || ||||||||
Sbjct 81379 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 81320
Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|| | | ||||| ||| |||||| |||||| |||| ||| | |||||||
Sbjct 81319 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 81269
Score = 102 bits (112), Expect = 2e-19
Identities = 163/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
||||||| || || ||| ||||| ||||||||| |||||| |||||||||||||||
Sbjct 251526 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 251467
Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGG 228
| | ||| || |||| | | || | ||| | || | || || | |||
Sbjct 251466 TGTGCGAAGGTAGGCTCAA---GCAAAGATTC--TGCTCGTGAGCGTAATGGTATAAGCC 251412
Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288
|| |||||| || ||| | ||| | ||| |||||||||||| | || ||||||||
Sbjct 251411 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 251352
Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|| | | ||||| ||| |||||| |||||| |||| ||| | |||||||
Sbjct 251351 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 251301
>seq14421
Length=430
Score = 102 bits (112), Expect = 2e-19
Identities = 162/231 (70%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
||||||| || || ||| ||||| ||||||||| |||||| |||||||||||||||
Sbjct 178 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 237
Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228
| | ||| || |||| || ||| | | || || | || || | |||
Sbjct 238 TGTGCGAAGGTAGGCTCAAGCAAAGATTCTGATCGTGAGC-----GTAATGGTATAAGCC 292
Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288
|| |||||| || ||| | ||| | ||| |||||||||||| | || ||||||||
Sbjct 293 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 352
Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|| | | ||||| ||| |||||| |||| | |||| ||| | |||||||
Sbjct 353 GTTCCGTGTGGAAGGGCTCTCGCTCAACGGTTCAAAGGTACGCCGGGGATA 403
>seq8
Length=41758685
Score = 102 bits (112), Expect = 2e-19
Identities = 163/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
||||||| || || ||| ||||| ||||||||| |||||| |||||||||||||||
Sbjct 33278517 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 33278576
Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGG 228
| | ||| || |||| | | || | ||| | || | || || | |||
Sbjct 33278577 TGTGCGAAGGTAGGCTCAA---GCAAAGATTC--TGCTCGTGAGCGTAATGGTATAAGCC 33278631
Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288
|| |||||| || ||| | ||| | ||| |||||||||||| | || ||||||||
Sbjct 33278632 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 33278691
Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|| | | ||||| ||| |||||| |||||| |||| ||| | |||||||
Sbjct 33278692 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 33278742
Score = 82.4 bits (90), Expect = 1e-13
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270
|||||||||||| ||||| | |||||||| | |||| | ||| ||||||||||||||||
Sbjct 3186226 AGTGCAAAGGCATAAGGGAGCTTGACTGCAAGACCCGCCCGTCGAGCAGGGACGAAAGTC 3186285
Query 271 GGGCTTAATGATCCG 285
|| ||| |||||||
Sbjct 3186286 GGTTTTAGTGATCCG 3186300
>seq7
Length=48366697
Score = 73.4 bits (80), Expect = 8e-11
Identities = 77/100 (77%), Gaps = 1/100 (1%)
Strand=Plus/Minus
Query 214 GCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGG 273
|||||| || || || | ||||| | | |||| | || |||||||| ||||| |||
Sbjct 36000539 GCAAAGCCATAAAGGAGCTTGACCTC-AGACCCACCCGTTGAGCAGGGAAGAAAGGCGGA 36000481
Query 274 CTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTC 313
|||| || || | ||||||||| ||||| |||||||||||
Sbjct 36000480 CTTAGTGCTCTGACGGTGCTGAGTGGAAGGGCCGTCGCTC 36000441
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982076927936
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |