Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_
202014-05-27] 32,886 sequences; 488,954,160 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq3 230 5e-58
seq32886 197 3e-48
seq1 181 2e-43
seq2 98.7 2e-18
seq8 93.3 9e-17
>seq3
Length=64984695
Score = 230 bits (254), Expect = 5e-58
Identities = 253/329 (77%), Gaps = 21/329 (6%)
Strand=Plus/Minus
Query 10 CCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAA 69
||| || |||||| | | |||||||||||| || |||||||||||||||||| ||
Sbjct 46735764 CCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAA 46735707
Query 70 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGA 129
|||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||
Sbjct 46735706 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 46735647
Query 130 TCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGC 189
|||||||||| |||||| ||| |||| |||||||||| ||| ||| ||||||||||||||
Sbjct 46735646 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 46735587
Query 190 TAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGT 248
||||| ||| | || | | || || ||| || ||| |||| | | |
Sbjct 46735586 TAATCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCT 46735540
Query 249 AGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGAT 306
| | || | ||||||||| |||||||| ||| ||||| || ||| ||||| |
Sbjct 46735539 CAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTCCCC--CTCCCAAGGGCAGGT 46735483
Query 307 TCCTAGGCATTACTCACCCGTCCGCCGCT 335
|| || || ||||||||||| ||||| ||
Sbjct 46735482 TCTTACGCGTTACTCACCCGCCCGCCACT 46735454
Score = 187 bits (206), Expect = 5e-45
Identities = 148/178 (83%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 41 GCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 100
|||||||||||||| |||||||||||||| |||||||||||||||| ||||| ||||||
Sbjct 30223639 GCTGGATCAGGCTTGCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 30223580
Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGC 160
|| |||||||||||| || ||||| |||||| ||| ||||||| || | ||| |||
Sbjct 30223579 GGGCCGTGTCTCAGTCCCGGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATCGG 30223520
Query 161 CTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218
|||||| |||| |||||| |||||||| ||||| | || ||||||||| | |||||
Sbjct 30223519 CTTGGTCAGCCTTTACCTAACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 30223462
>seq32886
Length=360271
Score = 197 bits (218), Expect = 3e-48
Identities = 178/220 (81%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58
|||||| | | ||| | ||||||| ||| ||||| |||| ||||||||||||| |||
Sbjct 355573 CTTTACGAGCGGAATTGCCCTTCTT-CACTCACGCAATATTG-CTGGATCAGGCTTGCGC 355516
Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118
||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| ||
Sbjct 355515 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 355456
Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178
||||| |||||| ||| ||||||| || | ||| ||| |||||| |||| ||||||
Sbjct 355455 GGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATCGGCTTGGTCAGCCTTTACCT 355396
Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218
|||||||| ||||| | || ||||||||| | |||||
Sbjct 355395 AACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 355356
>seq1
Length=43764888
Score = 181 bits (200), Expect = 2e-43
Identities = 175/220 (80%), Gaps = 5/220 (2%)
Strand=Plus/Minus
Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58
|||||||| | ||| | ||||||| ||| ||||| |||| ||||||||||||| |||
Sbjct 20268350 CTTTACAAGCGGAATTGCCCTTCTT-CACTCACGCAATATTG-CTGGATCAGGCTTGCGC 20268293
Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118
||||||||||| |||||||||||||||| || || |||||| | | |||||||||| ||
Sbjct 20268292 CCATTGTCCAAGATTCCCCACTGCTGCC-CCTGTGGGAGTCCAGGCTGTGTCTCAGTCCC 20268234
Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178
||||| |||||| ||| |||| || || | ||| ||| |||||| |||| ||||||
Sbjct 20268233 GGTGTGGCTGATCGTCCGAAAAGACTAGCTAAGCATCATCGGCTTGGTCAGCCTTTACCT 20268174
Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218
|||||||| ||||| | || ||||||||| | |||||
Sbjct 20268173 AACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 20268134
>seq2
Length=52886895
Score = 98.7 bits (108), Expect = 2e-18
Identities = 62/67 (93%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 49 AGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTG 108
|||||||||||||||| | || |||||||||||||||||||||||||||||| | |||||
Sbjct 49279024 AGGCTTTCGCCCATTGCCGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTAGGCCGTG 49279083
Query 109 TCTCAGT 115
|||||||
Sbjct 49279084 TCTCAGT 49279090
>seq8
Length=41758685
Score = 93.3 bits (102), Expect = 9e-17
Identities = 89/113 (79%), Gaps = 1/113 (1%)
Strand=Plus/Plus
Query 64 GTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 123
|||||| |||| |||||||||||| |||| |||||| || |||||||| ||| || |||
Sbjct 34530622 GTCCAAGATTCTCCACTGCTGCCT-CCGTGGGAGTCCGGGCCGTGTCTTAGTCCCGGTGG 34530680
Query 124 GACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTAC 176
|||||| ||| ||||||| || | ||| ||| |||||| |||| ||||
Sbjct 34530681 AGCTGATCGTCCGAAAAGACCAGCTAAGCATCATCGGCTTGGTCAGCCTTTAC 34530733
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071647462080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |