Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq3 230 5e-58 seq32886 197 3e-48 seq1 181 2e-43 seq2 98.7 2e-18 seq8 93.3 9e-17 >seq3 Length=64984695 Score = 230 bits (254), Expect = 5e-58 Identities = 253/329 (77%), Gaps = 21/329 (6%) Strand=Plus/Minus Query 10 CCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAA 69 ||| || |||||| | | |||||||||||| || |||||||||||||||||| || Sbjct 46735764 CCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAA 46735707 Query 70 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGA 129 |||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||| Sbjct 46735706 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 46735647 Query 130 TCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGC 189 |||||||||| |||||| ||| |||| |||||||||| ||| ||| |||||||||||||| Sbjct 46735646 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 46735587 Query 190 TAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGT 248 ||||| ||| | || | | || || ||| || ||| |||| | | | Sbjct 46735586 TAATCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCT 46735540 Query 249 AGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGAT 306 | | || | ||||||||| |||||||| ||| ||||| || ||| ||||| | Sbjct 46735539 CAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTCCCC--CTCCCAAGGGCAGGT 46735483 Query 307 TCCTAGGCATTACTCACCCGTCCGCCGCT 335 || || || ||||||||||| ||||| || Sbjct 46735482 TCTTACGCGTTACTCACCCGCCCGCCACT 46735454 Score = 187 bits (206), Expect = 5e-45 Identities = 148/178 (83%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 41 GCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 100 |||||||||||||| |||||||||||||| |||||||||||||||| ||||| |||||| Sbjct 30223639 GCTGGATCAGGCTTGCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 30223580 Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGC 160 || |||||||||||| || ||||| |||||| ||| ||||||| || | ||| ||| Sbjct 30223579 GGGCCGTGTCTCAGTCCCGGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATCGG 30223520 Query 161 CTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||| |||| |||||| |||||||| ||||| | || ||||||||| | ||||| Sbjct 30223519 CTTGGTCAGCCTTTACCTAACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 30223462 >seq32886 Length=360271 Score = 197 bits (218), Expect = 3e-48 Identities = 178/220 (81%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||| | | ||| | ||||||| ||| ||||| |||| ||||||||||||| ||| Sbjct 355573 CTTTACGAGCGGAATTGCCCTTCTT-CACTCACGCAATATTG-CTGGATCAGGCTTGCGC 355516 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 355515 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 355456 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 ||||| |||||| ||| ||||||| || | ||| ||| |||||| |||| |||||| Sbjct 355455 GGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATCGGCTTGGTCAGCCTTTACCT 355396 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 355395 AACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 355356 >seq1 Length=43764888 Score = 181 bits (200), Expect = 2e-43 Identities = 175/220 (80%), Gaps = 5/220 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | ||| | ||||||| ||| ||||| |||| ||||||||||||| ||| Sbjct 20268350 CTTTACAAGCGGAATTGCCCTTCTT-CACTCACGCAATATTG-CTGGATCAGGCTTGCGC 20268293 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| || || |||||| | | |||||||||| || Sbjct 20268292 CCATTGTCCAAGATTCCCCACTGCTGCC-CCTGTGGGAGTCCAGGCTGTGTCTCAGTCCC 20268234 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 ||||| |||||| ||| |||| || || | ||| ||| |||||| |||| |||||| Sbjct 20268233 GGTGTGGCTGATCGTCCGAAAAGACTAGCTAAGCATCATCGGCTTGGTCAGCCTTTACCT 20268174 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 20268173 AACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 20268134 >seq2 Length=52886895 Score = 98.7 bits (108), Expect = 2e-18 Identities = 62/67 (93%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 49 AGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTG 108 |||||||||||||||| | || |||||||||||||||||||||||||||||| | ||||| Sbjct 49279024 AGGCTTTCGCCCATTGCCGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTAGGCCGTG 49279083 Query 109 TCTCAGT 115 ||||||| Sbjct 49279084 TCTCAGT 49279090 >seq8 Length=41758685 Score = 93.3 bits (102), Expect = 9e-17 Identities = 89/113 (79%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 64 GTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 123 |||||| |||| |||||||||||| |||| |||||| || |||||||| ||| || ||| Sbjct 34530622 GTCCAAGATTCTCCACTGCTGCCT-CCGTGGGAGTCCGGGCCGTGTCTTAGTCCCGGTGG 34530680 Query 124 GACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTAC 176 |||||| ||| ||||||| || | ||| ||| |||||| |||| |||| Sbjct 34530681 AGCTGATCGTCCGAAAAGACCAGCTAAGCATCATCGGCTTGGTCAGCCTTTAC 34530733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071647462080