Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_
202014-05-27] 32,886 sequences; 488,954,160 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq32886 185 3e-44
seq6 89.7 2e-15
>seq32886
Length=360271
Score = 185 bits (204), Expect = 3e-44
Identities = 349/499 (70%), Gaps = 26/499 (5%)
Strand=Plus/Plus
Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146
||||| |||||| |||| ||||||||||||| || | ||| ||||| || |
Sbjct 82992 GGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGA 83051
Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206
||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| ||||
Sbjct 83052 AATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCAC 83111
Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGC 265
| ||||||||| | ||| | || || ||||||||||||||||| | | ||| | |
Sbjct 83112 AAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTC 83171
Query 266 GCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACG 325
||||||||||| ||||| |||||| | | |||||||| || | | | | |
Sbjct 83172 TCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC-AAATAGGAAGAACTAGAAG 83230
Query 326 CCCTATTCGGACTCGCTTTCGCTA-CGGCTACCCCACACGGGTTAA-CCTCGCGACACAA 383
|||| || |||| | | || |||| || | || |||| || | | | ||
Sbjct 83231 ----ATTC-CAC---CTTTGGAAAGCGCCTACACCTAATGGCTTAAGCCGCTCTTCCCAT 83282
Query 384 CGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA-CCTG-GTAC-CTAAAAGGC 440
| ||||| | | ||| | ||||||| ||||||| | || || | ||
Sbjct 83283 TTC---CTCGCTGACCCATCATGCAAAAGGTACGCCGTTAGAGTGAGTGCGCT-----TG 83334
Query 441 ACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGT--ACTATTTCACTCCCCGCCA 498
||| | || |||| |||||| ||| | | |||||| ||||| ||||||| |
Sbjct 83335 ACTACTCCTTCGACTGATTGTTTGCATCGGATCTCAGGTTCTCTATTGCACTCCCGTCAT 83394
Query 499 GGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTT 558
|||| |||||||||||||||||||||||||||| |||||||||||| |||| || ||
Sbjct 83395 AGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTT 83454
Query 559 AGGCTTAACGGGTGGTCCC 577
||||||| ||||||||||
Sbjct 83455 AGGCTTAGAGGGTGGTCCC 83473
Score = 185 bits (204), Expect = 3e-44
Identities = 349/499 (70%), Gaps = 26/499 (5%)
Strand=Plus/Plus
Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146
||||| |||||| |||| ||||||||||||| || | ||| ||||| || |
Sbjct 253024 GGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGA 253083
Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206
||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| ||||
Sbjct 253084 AATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCAC 253143
Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGC 265
| ||||||||| | ||| | || || ||||||||||||||||| | | ||| | |
Sbjct 253144 AAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTC 253203
Query 266 GCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACG 325
||||||||||| ||||| |||||| | | |||||||| || | | | | |
Sbjct 253204 TCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC-AAATAGGAAGAACTAGAAG 253262
Query 326 CCCTATTCGGACTCGCTTTCGCTA-CGGCTACCCCACACGGGTTAA-CCTCGCGACACAA 383
|||| || |||| | | || |||| || | || |||| || | | | ||
Sbjct 253263 ----ATTC-CAC---CTTTGGAAAGCGCCTACACCTAATGGCTTAAGCCGCTCTTCCCAT 253314
Query 384 CGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA-CCTG-GTAC-CTAAAAGGC 440
| ||||| | | ||| | ||||||| ||||||| | || || | ||
Sbjct 253315 TTC---CTCGCTGACCCATCATGCAAAAGGTACGCCGTTAGAGTGAGTGCGCT-----TG 253366
Query 441 ACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGT--ACTATTTCACTCCCCGCCA 498
||| | || |||| |||||| ||| | | |||||| ||||| ||||||| |
Sbjct 253367 ACTACTCCTTCGACTGATTGTTTGCATCGGATCTCAGGTTCTCTATTGCACTCCCGTCAT 253426
Query 499 GGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTT 558
|||| |||||||||||||||||||||||||||| |||||||||||| |||| || ||
Sbjct 253427 AGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTT 253486
Query 559 AGGCTTAACGGGTGGTCCC 577
||||||| ||||||||||
Sbjct 253487 AGGCTTAGAGGGTGGTCCC 253505
>seq6
Length=39822476
Score = 89.7 bits (98), Expect = 2e-15
Identities = 78/97 (80%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 139 TGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCC 198
||| ||| || |||||||||||||||||||||| | | ||| || |||| ||||||||
Sbjct 8321081 TGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACCC 8321140
Query 199 CTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGT 235
||| ||||| |||||| || | |||||||| | |||
Sbjct 8321141 CTAACCACAACTCATCCGCTGATTTTTCAACATCAGT 8321177
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1817002264064
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |