Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_
202014-05-27] 32,886 sequences; 488,954,160 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq32886 107 5e-21
>seq32886
Length=360271
Score = 107 bits (118), Expect = 5e-21
Identities = 140/193 (73%), Gaps = 17/193 (9%)
Strand=Plus/Plus
Query 203 TCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTC---------- 252
|||||||||||| || |||||||||||| || | | |||| |||
Sbjct 83287 TCGCTGACCCATCATGCAAAAGGTACGCCGTTAG---AGTGAGTGCGCTTGACTACTCCT 83343
Query 253 -CCACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCT 309
| |||| |||| |||| | | ||||| ||| ||| ||||||| || ||| ||||
Sbjct 83344 TCGACTGATTGTTTGCATCGGATCTCAGGTTCTCTATTGCACTCCCGTCATAGGG-TTCT 83402
Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369
|||| |||||||||||||||||| || | |||||||||| | || | || |||| ||| |
Sbjct 83403 TTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAG 83462
Query 370 AGGATGGTCCCCC 382
||| |||||||||
Sbjct 83463 AGGGTGGTCCCCC 83475
Score = 107 bits (118), Expect = 5e-21
Identities = 140/193 (73%), Gaps = 17/193 (9%)
Strand=Plus/Plus
Query 203 TCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTC---------- 252
|||||||||||| || |||||||||||| || | | |||| |||
Sbjct 253319 TCGCTGACCCATCATGCAAAAGGTACGCCGTTAG---AGTGAGTGCGCTTGACTACTCCT 253375
Query 253 -CCACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCT 309
| |||| |||| |||| | | ||||| ||| ||| ||||||| || ||| ||||
Sbjct 253376 TCGACTGATTGTTTGCATCGGATCTCAGGTTCTCTATTGCACTCCCGTCATAGGG-TTCT 253434
Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369
|||| |||||||||||||||||| || | |||||||||| | || | || |||| ||| |
Sbjct 253435 TTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAG 253494
Query 370 AGGATGGTCCCCC 382
||| |||||||||
Sbjct 253495 AGGGTGGTCCCCC 253507
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1241191687424
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |