Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq32886 107 5e-21 >seq32886 Length=360271 Score = 107 bits (118), Expect = 5e-21 Identities = 140/193 (73%), Gaps = 17/193 (9%) Strand=Plus/Plus Query 203 TCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTC---------- 252 |||||||||||| || |||||||||||| || | | |||| ||| Sbjct 83287 TCGCTGACCCATCATGCAAAAGGTACGCCGTTAG---AGTGAGTGCGCTTGACTACTCCT 83343 Query 253 -CCACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCT 309 | |||| |||| |||| | | ||||| ||| ||| ||||||| || ||| |||| Sbjct 83344 TCGACTGATTGTTTGCATCGGATCTCAGGTTCTCTATTGCACTCCCGTCATAGGG-TTCT 83402 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| |||||||||||||||||| || | |||||||||| | || | || |||| ||| | Sbjct 83403 TTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAG 83462 Query 370 AGGATGGTCCCCC 382 ||| ||||||||| Sbjct 83463 AGGGTGGTCCCCC 83475 Score = 107 bits (118), Expect = 5e-21 Identities = 140/193 (73%), Gaps = 17/193 (9%) Strand=Plus/Plus Query 203 TCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTC---------- 252 |||||||||||| || |||||||||||| || | | |||| ||| Sbjct 253319 TCGCTGACCCATCATGCAAAAGGTACGCCGTTAG---AGTGAGTGCGCTTGACTACTCCT 253375 Query 253 -CCACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCT 309 | |||| |||| |||| | | ||||| ||| ||| ||||||| || ||| |||| Sbjct 253376 TCGACTGATTGTTTGCATCGGATCTCAGGTTCTCTATTGCACTCCCGTCATAGGG-TTCT 253434 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| |||||||||||||||||| || | |||||||||| | || | || |||| ||| | Sbjct 253435 TTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAG 253494 Query 370 AGGATGGTCCCCC 382 ||| ||||||||| Sbjct 253495 AGGGTGGTCCCCC 253507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241191687424