Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_
202014-05-27] 32,886 sequences; 488,954,160 total letters
Query= AAMG01001432.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
seq3 210 4e-52
seq32886 132 1e-28
seq1 111 3e-22
seq2 89.7 1e-15
seq5 80.6 5e-13
>seq3
Length=64984695
Score = 210 bits (232), Expect = 4e-52
Identities = 231/305 (76%), Gaps = 18/305 (6%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| | || || |||||||||||||||||||||
Sbjct 46735741 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 46735682
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| |||
Sbjct 46735681 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 46735622
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
| ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || |
Sbjct 46735621 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 46735562
Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239
|| ||| || || ||| ||||| | | || | |||||||||
Sbjct 46735561 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 46735518
Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299
|||||||| ||| | || ||| || |||||||| || ||| |||||||||||| |||
Sbjct 46735517 CGTTTCCAGCTGTTGTCCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGCCCG 46735459
Query 300 CCACT 304
|||||
Sbjct 46735458 CCACT 46735454
Score = 132 bits (146), Expect = 1e-28
Identities = 121/153 (79%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
|||| |||||| || | |||||||| ||| || ||||||||||||| ||||| ||||||
Sbjct 30223639 GCTGGATCAGGCTTGCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 30223580
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126
|||||||||||||||||| |||||| | || || || || |||| ||| ||||
Sbjct 30223579 GGGCCGTGTCTCAGTCCCGGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATCGG 30223520
Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159
|||||| || ||| || ||||||||||||||
Sbjct 30223519 CTTGGTCAGCCTTTACCTAACCAACTACCTAAT 30223487
>seq32886
Length=360271
Score = 132 bits (146), Expect = 1e-28
Identities = 121/153 (79%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
|||| |||||| || | |||||||| ||| || ||||||||||||| ||||| ||||||
Sbjct 355533 GCTGGATCAGGCTTGCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 355474
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126
|||||||||||||||||| |||||| | || || || || |||| ||| ||||
Sbjct 355473 GGGCCGTGTCTCAGTCCCGGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATCGG 355414
Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159
|||||| || ||| || ||||||||||||||
Sbjct 355413 CTTGGTCAGCCTTTACCTAACCAACTACCTAAT 355381
>seq1
Length=43764888
Score = 111 bits (122), Expect = 3e-22
Identities = 117/153 (76%), Gaps = 1/153 (1%)
Strand=Plus/Minus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
|||| |||||| || | |||||||| ||| || ||||||||||||| || || ||||||
Sbjct 20268310 GCTGGATCAGGCTTGCGCCCATTGTCCAAGATTCCCCACTGCTGCC-CCTGTGGGAGTCC 20268252
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126
||| ||||||||||||| |||||| | || || || | |||| ||| ||||
Sbjct 20268251 AGGCTGTGTCTCAGTCCCGGTGTGGCTGATCGTCCGAAAAGACTAGCTAAGCATCATCGG 20268192
Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159
|||||| || ||| || ||||||||||||||
Sbjct 20268191 CTTGGTCAGCCTTTACCTAACCAACTACCTAAT 20268159
>seq2
Length=52886895
Score = 89.7 bits (98), Expect = 1e-15
Identities = 61/69 (88%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 15 AGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 74
||| |||| ||||||| || || ||||||||||||||||||||||||||| |||||||
Sbjct 49279024 AGGCTTTCGCCCATTGCCGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTAGGCCGTG 49279083
Query 75 TCTCAGTCC 83
|||||||||
Sbjct 49279084 TCTCAGTCC 49279092
>seq5
Length=46902585
Score = 80.6 bits (88), Expect = 5e-13
Identities = 126/178 (71%), Gaps = 18/178 (10%)
Strand=Plus/Plus
Query 128 TTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCG-ATA 186
||||| |||||| ||||||||||| |||||| | ||||||||| || | ||| ||
Sbjct 43673193 TTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGGGCGGATT 43673252
Query 187 AATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCC 246
|| || ||| ||||| | | || | ||||||||| |||||||
Sbjct 43673253 CCTCCTTT------------TGC--TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCC 43673296
Query 247 AAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304
| ||| |||| ||| || |||||||| || ||| |||||||||||||||||||||
Sbjct 43673297 AGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCGCCACT 43673353
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 998071666176
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |