Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq3 210 4e-52 seq32886 132 1e-28 seq1 111 3e-22 seq2 89.7 1e-15 seq5 80.6 5e-13 >seq3 Length=64984695 Score = 210 bits (232), Expect = 4e-52 Identities = 231/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 46735741 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 46735682 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 46735681 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 46735622 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || | Sbjct 46735621 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 46735562 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 46735561 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 46735518 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| | || ||| || |||||||| || ||| |||||||||||| ||| Sbjct 46735517 CGTTTCCAGCTGTTGTCCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGCCCG 46735459 Query 300 CCACT 304 ||||| Sbjct 46735458 CCACT 46735454 Score = 132 bits (146), Expect = 1e-28 Identities = 121/153 (79%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||||| || | |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 30223639 GCTGGATCAGGCTTGCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 30223580 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 |||||||||||||||||| |||||| | || || || || |||| ||| |||| Sbjct 30223579 GGGCCGTGTCTCAGTCCCGGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATCGG 30223520 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| || |||||||||||||| Sbjct 30223519 CTTGGTCAGCCTTTACCTAACCAACTACCTAAT 30223487 >seq32886 Length=360271 Score = 132 bits (146), Expect = 1e-28 Identities = 121/153 (79%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||||| || | |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 355533 GCTGGATCAGGCTTGCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 355474 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 |||||||||||||||||| |||||| | || || || || |||| ||| |||| Sbjct 355473 GGGCCGTGTCTCAGTCCCGGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATCGG 355414 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| || |||||||||||||| Sbjct 355413 CTTGGTCAGCCTTTACCTAACCAACTACCTAAT 355381 >seq1 Length=43764888 Score = 111 bits (122), Expect = 3e-22 Identities = 117/153 (76%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||||| || | |||||||| ||| || ||||||||||||| || || |||||| Sbjct 20268310 GCTGGATCAGGCTTGCGCCCATTGTCCAAGATTCCCCACTGCTGCC-CCTGTGGGAGTCC 20268252 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||| ||||||||||||| |||||| | || || || | |||| ||| |||| Sbjct 20268251 AGGCTGTGTCTCAGTCCCGGTGTGGCTGATCGTCCGAAAAGACTAGCTAAGCATCATCGG 20268192 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| || |||||||||||||| Sbjct 20268191 CTTGGTCAGCCTTTACCTAACCAACTACCTAAT 20268159 >seq2 Length=52886895 Score = 89.7 bits (98), Expect = 1e-15 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 15 AGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTG 74 ||| |||| ||||||| || || ||||||||||||||||||||||||||| ||||||| Sbjct 49279024 AGGCTTTCGCCCATTGCCGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTAGGCCGTG 49279083 Query 75 TCTCAGTCC 83 ||||||||| Sbjct 49279084 TCTCAGTCC 49279092 >seq5 Length=46902585 Score = 80.6 bits (88), Expect = 5e-13 Identities = 126/178 (71%), Gaps = 18/178 (10%) Strand=Plus/Plus Query 128 TTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCG-ATA 186 ||||| |||||| ||||||||||| |||||| | ||||||||| || | ||| || Sbjct 43673193 TTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGGGCGGATT 43673252 Query 187 AATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCC 246 || || ||| ||||| | | || | ||||||||| ||||||| Sbjct 43673253 CCTCCTTT------------TGC--TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCC 43673296 Query 247 AAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 | ||| |||| ||| || |||||||| || ||| ||||||||||||||||||||| Sbjct 43673297 AGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCGCCACT 43673353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998071666176