Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_
202014-05-27] 32,886 sequences; 488,954,160 total letters
Query= AAMG01001634.1
Length=217
Score E
Sequences producing significant alignments: (Bits) Value
seq736 188 8e-46
seq77 84.2 3e-14
seq3 84.2 3e-14
seq57 80.6 3e-13
seq20 80.6 3e-13
seq10 80.6 3e-13
seq824 78.8 1e-12
seq5 78.8 1e-12
seq2 77.0 4e-12
seq22 75.2 1e-11
>seq736
Length=7293
Score = 188 bits (208), Expect = 8e-46
Identities = 161/194 (83%), Gaps = 5/194 (3%)
Strand=Plus/Minus
Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1658 CTAGAAACCAACAAAATAGAACCGCGCGTCCTATTCTATTATTCCATGCTAATGTATTCG 1599
Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125
|| || |||||||||||||||||||||||| |||| ||||||||||||||||| | |||
Sbjct 1598 AGCATAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGTTCCCCGGCA 1539
Query 126 C-ACCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGG--TAATGCAGTACTCG 181
| ||| |||| ||||| | || || ||| |||| | ||| || | |||| | ||
Sbjct 1538 CGCCCAGTGAAGGGCATGC-GGTTCCCCAGGAGGAAAGGCCCGGCCGGAGCCAGTGCACG 1480
Query 182 CCGTGAGGCGGACC 195
| ||||||||||||
Sbjct 1479 CGGTGAGGCGGACC 1466
>seq77
Length=66831
Score = 84.2 bits (92), Expect = 3e-14
Identities = 79/98 (81%), Gaps = 2/98 (2%)
Strand=Plus/Minus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71
|||||| |||||| || | ||||||| | |||| |||||||||||||| | | |||||
Sbjct 53247 CCAACACAATAGGATCGAAA-TCCTATTATGTTATCCCATGCTAATGTATACAGAGCGTA 53189
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109
|| |||||||| ||||||||||| |||| |||| ||
Sbjct 53188 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 53151
>seq3
Length=64984695
Score = 84.2 bits (92), Expect = 3e-14
Identities = 79/98 (81%), Gaps = 2/98 (2%)
Strand=Plus/Plus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71
|||||| |||||| || | ||||||| | |||| |||||||||||||| | | |||||
Sbjct 41279655 CCAACACAATAGGATCGAAA-TCCTATTATGTTATCCCATGCTAATGTATACAGAGCGTA 41279713
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109
|| |||||||| ||||||||||| |||| |||| ||
Sbjct 41279714 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 41279751
>seq57
Length=90757
Score = 80.6 bits (88), Expect = 3e-13
Identities = 78/98 (80%), Gaps = 2/98 (2%)
Strand=Plus/Minus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71
|||||| |||||| || | |||||| | |||| |||||||||||||| | | |||||
Sbjct 89695 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 89637
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109
|| |||||||| ||||||||||| |||| |||| ||
Sbjct 89636 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 89599
>seq20
Length=193719
Score = 80.6 bits (88), Expect = 3e-13
Identities = 78/98 (80%), Gaps = 2/98 (2%)
Strand=Plus/Minus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71
|||||| |||||| || | |||||| | |||| |||||||||||||| | | |||||
Sbjct 65980 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 65922
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109
|| |||||||| ||||||||||| |||| |||| ||
Sbjct 65921 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 65884
Score = 80.6 bits (88), Expect = 3e-13
Identities = 78/98 (80%), Gaps = 2/98 (2%)
Strand=Plus/Minus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71
|||||| |||||| || | |||||| | |||| |||||||||||||| | | |||||
Sbjct 98316 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 98258
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109
|| |||||||| ||||||||||| |||| |||| ||
Sbjct 98257 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 98220
>seq10
Length=550871
Score = 80.6 bits (88), Expect = 3e-13
Identities = 78/98 (80%), Gaps = 2/98 (2%)
Strand=Plus/Minus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71
|||||| |||||| || | |||||| | |||| |||||||||||||| | | |||||
Sbjct 88341 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 88283
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109
|| |||||||| ||||||||||| |||| |||| ||
Sbjct 88282 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 88245
>seq824
Length=6319
Score = 78.8 bits (86), Expect = 1e-12
Identities = 76/95 (80%), Gaps = 2/95 (2%)
Strand=Plus/Plus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71
|||||| | |||| || | |||||| |||||| |||||||||||||| | | |||||
Sbjct 614 CCAACACAGTAGGATCGAAA-TCCTATGATATTATCCCATGCTAATGTATACAGAGCGTA 672
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAA 106
|| |||||||| ||||||||||| |||| ||||
Sbjct 673 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAA 707
>seq5
Length=46902585
Score = 78.8 bits (86), Expect = 1e-12
Identities = 76/95 (80%), Gaps = 2/95 (2%)
Strand=Plus/Plus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71
|||||| |||||| || | |||||| | |||| |||||||||||||| | | |||||
Sbjct 32699311 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 32699369
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAA 106
|| |||||||| ||||||||||| |||| ||||
Sbjct 32699370 TGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAA 32699404
>seq2
Length=52886895
Score = 77.0 bits (84), Expect = 4e-12
Identities = 78/99 (79%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 12 ACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTC-GGGCGT 70
||||||| |||||| ||| | |||||| | |||| |||||||||||||| | | ||||
Sbjct 45074685 ACCAACACAATAGGAACGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGT 45074627
Query 71 AAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109
| || | |||||| ||| ||||||| |||| |||| ||
Sbjct 45074626 AGGCTTCCTTTGAGCACACTAATTTCTTCAAAGTAACAG 45074588
>seq22
Length=192287
Score = 75.2 bits (82), Expect = 1e-11
Identities = 64/78 (82%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 34 TCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTAAGCCTGCTTTGAACACTCTAA 92
|||||| | |||| | |||||||||||| | | ||||| || |||||||| ||||||||
Sbjct 37833 TCCTATGATGTTATCCAATGCTAATGTATACAGAGCGTAGGCTTGCTTTGAGCACTCTAA 37774
Query 93 TTTTCTCAAGGTAAAAGT 110
||| |||| ||||||||
Sbjct 37773 TTTCTTCAAAGTAAAAGT 37756
Score = 75.2 bits (82), Expect = 1e-11
Identities = 77/98 (79%), Gaps = 2/98 (2%)
Strand=Plus/Minus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71
|||||| |||||| || | |||||| | |||| |||||||||||||| | | |||||
Sbjct 80098 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 80040
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109
|| |||||||| ||||||||||| |||| ||| ||
Sbjct 80039 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAATAACAG 80002
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595010379324
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |