Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq736 188 8e-46 seq77 84.2 3e-14 seq3 84.2 3e-14 seq57 80.6 3e-13 seq20 80.6 3e-13 seq10 80.6 3e-13 seq824 78.8 1e-12 seq5 78.8 1e-12 seq2 77.0 4e-12 seq22 75.2 1e-11 >seq736 Length=7293 Score = 188 bits (208), Expect = 8e-46 Identities = 161/194 (83%), Gaps = 5/194 (3%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 1658 CTAGAAACCAACAAAATAGAACCGCGCGTCCTATTCTATTATTCCATGCTAATGTATTCG 1599 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || || |||||||||||||||||||||||| |||| ||||||||||||||||| | ||| Sbjct 1598 AGCATAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGTTCCCCGGCA 1539 Query 126 C-ACCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGG--TAATGCAGTACTCG 181 | ||| |||| ||||| | || || ||| |||| | ||| || | |||| | || Sbjct 1538 CGCCCAGTGAAGGGCATGC-GGTTCCCCAGGAGGAAAGGCCCGGCCGGAGCCAGTGCACG 1480 Query 182 CCGTGAGGCGGACC 195 | |||||||||||| Sbjct 1479 CGGTGAGGCGGACC 1466 >seq77 Length=66831 Score = 84.2 bits (92), Expect = 3e-14 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | ||||||| | |||| |||||||||||||| | | ||||| Sbjct 53247 CCAACACAATAGGATCGAAA-TCCTATTATGTTATCCCATGCTAATGTATACAGAGCGTA 53189 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 53188 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 53151 >seq3 Length=64984695 Score = 84.2 bits (92), Expect = 3e-14 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | ||||||| | |||| |||||||||||||| | | ||||| Sbjct 41279655 CCAACACAATAGGATCGAAA-TCCTATTATGTTATCCCATGCTAATGTATACAGAGCGTA 41279713 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 41279714 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 41279751 >seq57 Length=90757 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 89695 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 89637 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 89636 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 89599 >seq20 Length=193719 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 65980 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 65922 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 65921 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 65884 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 98316 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 98258 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 98257 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 98220 >seq10 Length=550871 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 88341 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 88283 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 88282 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 88245 >seq824 Length=6319 Score = 78.8 bits (86), Expect = 1e-12 Identities = 76/95 (80%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| | |||| || | |||||| |||||| |||||||||||||| | | ||||| Sbjct 614 CCAACACAGTAGGATCGAAA-TCCTATGATATTATCCCATGCTAATGTATACAGAGCGTA 672 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAA 106 || |||||||| ||||||||||| |||| |||| Sbjct 673 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAA 707 >seq5 Length=46902585 Score = 78.8 bits (86), Expect = 1e-12 Identities = 76/95 (80%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 32699311 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 32699369 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAA 106 || |||||||| ||||||||||| |||| |||| Sbjct 32699370 TGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAA 32699404 >seq2 Length=52886895 Score = 77.0 bits (84), Expect = 4e-12 Identities = 78/99 (79%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 12 ACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTC-GGGCGT 70 ||||||| |||||| ||| | |||||| | |||| |||||||||||||| | | |||| Sbjct 45074685 ACCAACACAATAGGAACGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGT 45074627 Query 71 AAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 | || | |||||| ||| ||||||| |||| |||| || Sbjct 45074626 AGGCTTCCTTTGAGCACACTAATTTCTTCAAAGTAACAG 45074588 >seq22 Length=192287 Score = 75.2 bits (82), Expect = 1e-11 Identities = 64/78 (82%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 34 TCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTAAGCCTGCTTTGAACACTCTAA 92 |||||| | |||| | |||||||||||| | | ||||| || |||||||| |||||||| Sbjct 37833 TCCTATGATGTTATCCAATGCTAATGTATACAGAGCGTAGGCTTGCTTTGAGCACTCTAA 37774 Query 93 TTTTCTCAAGGTAAAAGT 110 ||| |||| |||||||| Sbjct 37773 TTTCTTCAAAGTAAAAGT 37756 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/98 (79%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 80098 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 80040 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| ||| || Sbjct 80039 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAATAACAG 80002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595010379324