Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_
202014-05-27] 32,886 sequences; 488,954,160 total letters
Query= AAMG01001844.1
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
seq3 167 4e-39
seq32886 113 7e-23
seq4 84.2 4e-14
seq936 78.8 2e-12
>seq3
Length=64984695
Score = 167 bits (184), Expect = 4e-39
Identities = 208/285 (73%), Gaps = 0/285 (0%)
Strand=Plus/Minus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
||||||| ||||| |||||| | | |||||| || |||||| |||||||| |
Sbjct 46736087 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 46736028
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
| || |||||||||||||||||| ||| | |||||| |||| || | | |||||||
Sbjct 46736027 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCAAG 46735968
Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185
|||||| | || | ||||||||||| | ||| || | |||||
Sbjct 46735967 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 46735908
Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245
|| |||||| | |||||| |||||| | |||||||||||||||| ||| ||||||
Sbjct 46735907 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 46735848
Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||| ||||||||| ||||||||| ||| ||
Sbjct 46735847 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 46735803
Score = 100 bits (110), Expect = 5e-19
Identities = 81/98 (83%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247
|||||||| ||||||||| || | | | |||| | ||| |||||| || ||| |||||
Sbjct 30223834 CCGCCTACGTGCCCTTTACGCCTAGTCATTCCGAAGAACACTTGCCCCCCCCGTTTTACC 30223775
Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285
||||||||||||||| ||||||||| ||||| ||||||
Sbjct 30223774 GCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 30223737
>seq32886
Length=360271
Score = 113 bits (124), Expect = 7e-23
Identities = 198/288 (69%), Gaps = 8/288 (3%)
Strand=Plus/Minus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
|||| |||||||| | ||||||| || |||| | | |||||||| ||| ||
Sbjct 355890 CCCATGCTTTCGCACACCAGCGTCGGTAGAGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 355831
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|||| |||| ||| |||||||| || |||||| |||||| | ||||| |||
Sbjct 355830 TCCTTCGTAGATCCGTAGATTTCACCCCTCCACACGAAATTCCACTCTCCTCTGTCTCAC 355771
Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATCTG 177
||||| | ||||| || ||| || | |||| | |||||| |
Sbjct 355770 TCAAGTTCAGTGGTTTCGAAAGCATTCCGCCACTTTTTGACGAC-----TTTCACTTTCA 355716
Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237
|| | |||||||| ||||||||| || | | | |||| | ||| |||||| ||
Sbjct 355715 ACCCGATGAACCGCCTACGTGCCCTTTACGCCTAGTCATTCCGAAGAACACTTGCCCCCC 355656
Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285
||| |||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct 355655 CCGTTTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 355608
>seq4
Length=53719093
Score = 84.2 bits (92), Expect = 4e-14
Identities = 60/69 (87%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 201 CTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCA 260
|||||| |||||| | |||||||||||||||| ||| |||||||||||||||||||||
Sbjct 42837326 CTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTACCGCGGCTGCTGGCA 42837385
Query 261 CGTAGTTAG 269
| ||||||
Sbjct 42837386 CAGAGTTAG 42837394
>seq936
Length=4617
Score = 78.8 bits (86), Expect = 2e-12
Identities = 67/83 (81%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244
|| ||| |||| ||||||| |||||||||| |||| || ||| ||||||||||
Sbjct 3398 TTACCGTCTACTTACCCTTTAAACCCAATAAAGATAACTAACACTAGCCTCCTACGTATT 3457
Query 245 ACCGCGGCTGCTGGCACGTAGTT 267
|||||| ||||||||||||||||
Sbjct 3458 ACCGCGACTGCTGGCACGTAGTT 3480
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 828535958306
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |