Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_
202014-05-27] 32,886 sequences; 488,954,160 total letters
Query= AAMG01001851.1
Length=140
Score E
Sequences producing significant alignments: (Bits) Value
seq216 87.8 1e-15
seq5 78.8 7e-13
>seq216
Length=33545
Score = 87.8 bits (96), Expect = 1e-15
Identities = 90/118 (76%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|| |||||||||||||||||| |||||||||| || || |||||||||| | ||
Sbjct 30217 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGA 30276
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||| |||||| | || | ||| ||| |||||| | ||| |||| |||||||
Sbjct 30277 CTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 30334
>seq5
Length=46902585
Score = 78.8 bits (86), Expect = 7e-13
Identities = 88/118 (75%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|| |||||||||||||||||| || ||||||| || ||| |||||||||| | ||
Sbjct 20578280 TAACTTTTATCCGTTGAGCGACGGTCCTTCCACTCCGCACCATCGGATCACTAAGGCCGA 20578221
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
||||| |||||| | || | ||| ||| |||||| ||| |||| |||||||
Sbjct 20578220 TTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTTCCTTCTGCCTTTGCACT 20578163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 351891476200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |