Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq736 266 3e-69 seq57 127 2e-27 seq20 127 2e-27 seq22 122 9e-26 seq10 113 5e-23 seq5 113 5e-23 seq32691 96.9 4e-18 seq3 84.2 2e-14 >seq736 Length=7293 Score = 266 bits (294), Expect = 3e-69 Identities = 173/189 (92%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 1545 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTATGCTCGAATA 1604 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct 1605 CATTAGCATGGAATAATAGAATAGGACGCGCGGTTCTATTTTGTTGGTTTCTAGGACCG- 1663 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||| ||||||||| || ||||||| | |||| ||||||||||| Sbjct 1664 CCGTAATGATTAATAGGGACAGTCGGGGGCATCCGTATTCAGTAGTCAGAGGTGAAATTC 1723 Query 181 TTGGATTTA 189 |||||| || Sbjct 1724 TTGGATCTA 1732 >seq57 Length=90757 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 89599 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 89658 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 89659 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 89716 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 89717 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 89776 Query 190 T 190 | Sbjct 89777 T 89777 >seq20 Length=193719 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 65884 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 65943 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 65944 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 66001 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 66002 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 66061 Query 190 T 190 | Sbjct 66062 T 66062 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 98220 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 98279 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 98280 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 98337 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 98338 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 98397 Query 190 T 190 | Sbjct 98398 T 98398 Score = 84.2 bits (92), Expect = 2e-14 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| ||||| |||| | |||||| | || | ||||| ||| || | ||| Sbjct 102765 ATACATTAGCATGGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGAT 102823 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||| || | ||| ||||||||| | ||||| || |||| |||||||| Sbjct 102824 CGGA-GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAA 102882 Query 178 TTCTTGGATTTAT 190 ||||||||||||| Sbjct 102883 TTCTTGGATTTAT 102895 >seq22 Length=192287 Score = 122 bits (134), Expect = 9e-26 Identities = 138/181 (76%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || ||| |||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 80002 CTGTTATTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 80061 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 80062 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 80119 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 80120 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 80179 Query 190 T 190 | Sbjct 80180 T 80180 Score = 122 bits (134), Expect = 9e-26 Identities = 138/181 (76%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGA-ATACATTACCAT 69 || |||||| ||| ||||||||| | |||||||| |||| ||| | |||||||| ||| Sbjct 151154 CTGTTACTTCGAAGAAATTAGAGTGCTCAAAGCAAGCCTACCCTCTATATACATTAGCAT 151213 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | | ||||||| ||| || | |||| || ||||||| Sbjct 151214 GGGATAACATCATAGGATTTT-GATTCTATTGTGTTGGCCTTCAGGATCGGA-GTAATGA 151271 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 151272 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 151331 Query 190 T 190 | Sbjct 151332 T 151332 Score = 104 bits (114), Expect = 2e-20 Identities = 134/181 (74%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGA-ATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| | | |||||||| ||| Sbjct 118166 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACACCCTTTATACATTAGCAT 118225 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | | | ||||| || || | |||| || ||||||| Sbjct 118226 GGGATAACATCATAGGATTT-CTATCCTATTGTGCTGGCCTTCAGGATCGGA-GTAATGA 118283 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | |||||||||||| | |||| || |||| |||||||||||||||||||| Sbjct 118284 TTAACAGAGATAGTCGGGGGCATTCATATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 118343 Query 190 T 190 | Sbjct 118344 T 118344 Score = 84.2 bits (92), Expect = 2e-14 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| ||||| |||| | |||||| | || | ||||| ||| || | ||| Sbjct 16709 ATACATTAGCATGGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGAT 16767 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||| || | ||| ||||||||| | ||||| || |||| |||||||| Sbjct 16768 CGGA-GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAA 16826 Query 178 TTCTTGGATTTAT 190 ||||||||||||| Sbjct 16827 TTCTTGGATTTAT 16839 Score = 75.2 bits (82), Expect = 1e-11 Identities = 64/78 (82%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCA 68 |||||||||||||| ||||||||| | |||||||| |||| |||| | |||||||| || Sbjct 37756 ACTTTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCA 37815 Query 69 TGGAATAATAGAATAGGA 86 | | |||| | |||||| Sbjct 37816 TTGGATAACATCATAGGA 37833 >seq10 Length=550871 Score = 113 bits (124), Expect = 5e-23 Identities = 136/181 (75%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 88245 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 88304 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 88305 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGTA-GTAATGA 88362 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| |||| |||| | |||| || |||| |||||||| ||||||||||| Sbjct 88363 TTAACAGGGACAGTCAGGGGCATTCATATTTCATAGTCAGAGGTGAAACTCTTGGATTTA 88422 Query 190 T 190 | Sbjct 88423 T 88423 >seq5 Length=46902585 Score = 113 bits (124), Expect = 5e-23 Identities = 134/178 (75%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| || | |||| | |||||||| ||||| Sbjct 32699404 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCATACGCTCTGTATACATTAGCATGGG 32699345 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | || | ||||| ||| || | ||| || | |||||| | Sbjct 32699344 ATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GCAATGATTA 32699287 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||| ||| || |||||| | ||||| || || | ||||||||||||||||||||| Sbjct 32699286 ATAGGGACAGCCGGGGGCATTCGTATTTCATAGTTAGAGGTGAAATTCTTGGATTTAT 32699229 >seq32691 Length=200 Score = 96.9 bits (106), Expect = 4e-18 Identities = 128/174 (74%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||| ||| | || ||||| |||| |||| | ||||||| ||| Sbjct 172 CTGTTACTTTGAAGAAATTTGAGTGCTCTAAGCAAGCCTACGCTCTGTATACATTTGCAT 113 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | | |||| | || | ||||| ||| || | |||| || ||||||| Sbjct 112 GGGATAACATCAAAGGATTT-CGATCCTATTGTGTTGGCCTTCAGGAACGGA-GTAATGA 55 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 | || | ||| |||||| || | ||||| || |||| |||||||||||||| Sbjct 54 TTAACATGGACAGTCGGAGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTG 1 >seq3 Length=64984695 Score = 84.2 bits (92), Expect = 2e-14 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| ||||| |||| | |||||| | || | ||||| ||| || | ||| Sbjct 24562874 ATACATTAGCATGGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGAT 24562816 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||| || | ||| ||||||||| | ||||| || |||| |||||||| Sbjct 24562815 CGGA-GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAA 24562757 Query 178 TTCTTGGATTTAT 190 ||||||||||||| Sbjct 24562756 TTCTTGGATTTAT 24562744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511836885440