Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_
202014-05-27] 32,886 sequences; 488,954,160 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq216 268 1e-69
seq32886 199 6e-49
seq8 199 6e-49
seq1 82.4 1e-13
>seq216
Length=33545
Score = 268 bits (296), Expect = 1e-69
Identities = 224/273 (82%), Gaps = 1/273 (0%)
Strand=Plus/Plus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| ||||||||| |||||| |||||| ||| |||| ||| ||||||
Sbjct 29883 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 29942
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | | |||| | ||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 29943 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 30002
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
| ||| || ||||||||| || |||||||| |||||| ||||||||||||||| ||
Sbjct 30003 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 30062
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242
|||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || |
Sbjct 30063 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 30122
Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||| |||||||||| | || ||||||||||||
Sbjct 30123 ACTACAGCCCCAGGCGGCGAAGAGCCGACATCG 30155
>seq32886
Length=360271
Score = 199 bits (220), Expect = 6e-49
Identities = 196/251 (78%), Gaps = 4/251 (2%)
Strand=Plus/Plus
Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88
|||| || | || | | ||||||||||||| || ||| ||| || ||||| ||| |
Sbjct 80968 CAGCAGTTCTTCCATACCAACTTAGCTTCCCGGCGCTGCTATTGTCATAACAACCGGTAC 81027
Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTC-CT 147
|||| ||||| | ||| ||| |||||||||||||| || ||||||| || | || ||
Sbjct 81028 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCGCT 81087
Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204
|| || ||| |||||| ||||||||||||| ||||||||| |||||| ||| |||
Sbjct 81088 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 81147
Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264
|| ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || |
Sbjct 81148 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 81207
Query 265 AGCCGACATCG 275
|| ||||||||
Sbjct 81208 AGTCGACATCG 81218
Score = 199 bits (220), Expect = 6e-49
Identities = 196/251 (78%), Gaps = 4/251 (2%)
Strand=Plus/Plus
Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88
|||| || | || | | ||||||||||||| || ||| ||| || ||||| ||| |
Sbjct 251000 CAGCAGTTCTTCCATACCAACTTAGCTTCCCGGCGCTGCTATTGTCATAACAACCGGTAC 251059
Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTC-CT 147
|||| ||||| | ||| ||| |||||||||||||| || ||||||| || | || ||
Sbjct 251060 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCGCT 251119
Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204
|| || ||| |||||| ||||||||||||| ||||||||| |||||| ||| |||
Sbjct 251120 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 251179
Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264
|| ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || |
Sbjct 251180 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 251239
Query 265 AGCCGACATCG 275
|| ||||||||
Sbjct 251240 AGTCGACATCG 251250
>seq8
Length=41758685
Score = 199 bits (220), Expect = 6e-49
Identities = 196/251 (78%), Gaps = 4/251 (2%)
Strand=Plus/Minus
Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88
|||| || | || | | ||||||||||||| || ||| ||| || ||||| ||| |
Sbjct 33279043 CAGCAGTTCTTCCATACCAACTTAGCTTCCCGGCGCTGCTATTGTCATAACAACCGGTAC 33278984
Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTC-CT 147
|||| ||||| | ||| ||| |||||||||||||| || ||||||| || | || ||
Sbjct 33278983 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCGCT 33278924
Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204
|| || ||| |||||| ||||||||||||| ||||||||| |||||| ||| |||
Sbjct 33278923 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 33278864
Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264
|| ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || |
Sbjct 33278863 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 33278804
Query 265 AGCCGACATCG 275
|| ||||||||
Sbjct 33278803 AGTCGACATCG 33278793
>seq1
Length=43764888
Score = 82.4 bits (90), Expect = 1e-13
Identities = 69/85 (81%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 188 CTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTC 247
||||||| ||||| ||| || ||||||||||||||||| |||| |||||| || |||| |
Sbjct 16246277 CTGAACCTAGCTCACGTACCGCTTTAATGGGCGAACAGGCCAATCCTTGGAACATACTAC 16246218
Query 248 AGCCCCAGGATGAGACGAGCCGACA 272
||||| ||| | || ||| ||||
Sbjct 16246217 AGCCCGAGGTGGCGAATAGCAGACA 16246193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780551250296
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |