Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq3 269 6e-70 seq32886 170 5e-40 seq1 152 1e-34 seq5 95.1 3e-17 seq2 89.7 1e-15 seq8 84.2 5e-14 >seq3 Length=64984695 Score = 269 bits (298), Expect = 6e-70 Identities = 303/404 (75%), Gaps = 30/404 (7%) Strand=Plus/Minus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| ||||||||| | | |||||||||| ||| | |||||||| ||||||||| | || Sbjct 46735766 ACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAA 46735707 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 46735706 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 46735647 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||||||||| Sbjct 46735646 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 46735587 Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250 ||||| | | | | ||| || | || ||| ||| |||| || | Sbjct 46735586 TAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGCTCCTCA 46735538 Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310 | | || | ||||||||| |||||||||| ||| ||||||||| ||||| ||| Sbjct 46735537 GCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTCCCCCTCCCAAGGGCAGGTTCT 46735480 Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370 | | ||||||||||| |||||||| ||| || || |||| ||| Sbjct 46735479 TACGCGTTACTCACCCGCCCGCCACT------GGAAACACCA-----CTTC------CCG 46735437 Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | |||||||||||||||| || ||||||||||||||| ||||| Sbjct 46735436 TCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 46735393 Score = 156 bits (172), Expect = 1e-35 Identities = 128/156 (82%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 39 ATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAG 98 || |||| |||||||||||||||||||| ||| |||||||||||||||| ||||| |||| Sbjct 30223642 ATTGCTGGATCAGGCTTGCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAG 30223583 Query 99 TCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGT 158 || || |||||||||||| || ||||||||| || ||| |||||||||| | ||| | Sbjct 30223582 TCCGGGCCGTGTCTCAGTCCCGGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCAT 30223523 Query 159 CGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194 || || ||| ||| ||||| ||||||| ||||| Sbjct 30223522 CGGCTTGGTCAGCCTTTACCTAACCAACTACCTAAT 30223487 >seq32886 Length=360271 Score = 170 bits (188), Expect = 5e-40 Identities = 154/193 (80%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||| | | ||| | ||||||||| ||||| || |||| ||||||||||||||| Sbjct 355573 CTTTACGAGCGGAATTGCCCTTCTTCACTCACGCAATATTGCTGGATCAGGCTTGCGCCC 355514 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| || | Sbjct 355513 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCGG 355454 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| || ||| |||||||||| | ||| ||| || ||| ||| ||||| Sbjct 355453 TGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATCGGCTTGGTCAGCCTTTACCTAA 355394 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 355393 CCAACTACCTAAT 355381 >seq1 Length=43764888 Score = 152 bits (168), Expect = 1e-34 Identities = 151/193 (78%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | ||| | ||||||||| ||||| || |||| ||||||||||||||| Sbjct 20268350 CTTTACAAGCGGAATTGCCCTTCTTCACTCACGCAATATTGCTGGATCAGGCTTGCGCCC 20268291 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| || || |||||| | | |||||||||| || | Sbjct 20268290 ATTGTCCAAGATTCCCCACTGCTGCC-CCTGTGGGAGTCCAGGCTGTGTCTCAGTCCCGG 20268232 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| || ||| |||| ||||| | ||| ||| || ||| ||| ||||| Sbjct 20268231 TGTGGCTGATCGTCCGAAAAGACTAGCTAAGCATCATCGGCTTGGTCAGCCTTTACCTAA 20268172 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 20268171 CCAACTACCTAAT 20268159 >seq5 Length=46902585 Score = 95.1 bits (104), Expect = 3e-17 Identities = 113/154 (73%), Gaps = 17/154 (11%) Strand=Plus/Plus Query 261 GGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTAC 320 ||||||||| |||||||||| ||| | ||||||| ||||| ||| | | |||| Sbjct 43673278 GGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTAC 43673337 Query 321 TCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGC 380 |||||||||||||||| ||| || || |||| |||| |||||||| Sbjct 43673338 TCACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCGTCCGACTTGC 43673380 Query 381 ATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||| || ||||||||||||||| ||||| Sbjct 43673381 ATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 43673414 >seq2 Length=52886895 Score = 89.7 bits (98), Expect = 1e-15 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 50 AGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTG 109 |||||| ||||||||| || |||||||||||||||||||||||||||||| | ||||| Sbjct 49279024 AGGCTTTCGCCCATTGCCGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTAGGCCGTG 49279083 Query 110 TCTCAGT 116 ||||||| Sbjct 49279084 TCTCAGT 49279090 >seq8 Length=41758685 Score = 84.2 bits (92), Expect = 5e-14 Identities = 87/113 (77%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 || ||| |||| |||||||||||| |||| |||||| || |||||||| ||| || ||| Sbjct 34530622 GTCCAAGATTCTCCACTGCTGCCT-CCGTGGGAGTCCGGGCCGTGTCTTAGTCCCGGTGG 34530680 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTAC 177 |||| || ||| |||||||||| | ||| ||| || ||| ||| |||| Sbjct 34530681 AGCTGATCGTCCGAAAAGACCAGCTAAGCATCATCGGCTTGGTCAGCCTTTAC 34530733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221998001536