Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_
202014-05-27] 32,886 sequences; 488,954,160 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq3 269 6e-70
seq32886 170 5e-40
seq1 152 1e-34
seq5 95.1 3e-17
seq2 89.7 1e-15
seq8 84.2 5e-14
>seq3
Length=64984695
Score = 269 bits (298), Expect = 6e-70
Identities = 303/404 (75%), Gaps = 30/404 (7%)
Strand=Plus/Minus
Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70
||||| ||||||||| | | |||||||||| ||| | |||||||| ||||||||| | ||
Sbjct 46735766 ACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAA 46735707
Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 46735706 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 46735647
Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190
|||||||||| ||||||||| |||| |||||| ||| || ||| || | |||||||||
Sbjct 46735646 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 46735587
Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250
||||| | | | | ||| || | || ||| ||| |||| || |
Sbjct 46735586 TAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGCTCCTCA 46735538
Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310
| | || | ||||||||| |||||||||| ||| ||||||||| ||||| |||
Sbjct 46735537 GCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTCCCCCTCCCAAGGGCAGGTTCT 46735480
Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370
| | ||||||||||| |||||||| ||| || || |||| |||
Sbjct 46735479 TACGCGTTACTCACCCGCCCGCCACT------GGAAACACCA-----CTTC------CCG 46735437
Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
| |||||||||||||||| || ||||||||||||||| |||||
Sbjct 46735436 TCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 46735393
Score = 156 bits (172), Expect = 1e-35
Identities = 128/156 (82%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 39 ATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAG 98
|| |||| |||||||||||||||||||| ||| |||||||||||||||| ||||| ||||
Sbjct 30223642 ATTGCTGGATCAGGCTTGCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAG 30223583
Query 99 TCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGT 158
|| || |||||||||||| || ||||||||| || ||| |||||||||| | ||| |
Sbjct 30223582 TCCGGGCCGTGTCTCAGTCCCGGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCAT 30223523
Query 159 CGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194
|| || ||| ||| ||||| ||||||| |||||
Sbjct 30223522 CGGCTTGGTCAGCCTTTACCTAACCAACTACCTAAT 30223487
>seq32886
Length=360271
Score = 170 bits (188), Expect = 5e-40
Identities = 154/193 (80%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61
|||||| | | ||| | ||||||||| ||||| || |||| |||||||||||||||
Sbjct 355573 CTTTACGAGCGGAATTGCCCTTCTTCACTCACGCAATATTGCTGGATCAGGCTTGCGCCC 355514
Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121
||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| || |
Sbjct 355513 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCGG 355454
Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181
|||||||| || ||| |||||||||| | ||| ||| || ||| ||| |||||
Sbjct 355453 TGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATCGGCTTGGTCAGCCTTTACCTAA 355394
Query 182 CCAACTAGCTAAT 194
||||||| |||||
Sbjct 355393 CCAACTACCTAAT 355381
>seq1
Length=43764888
Score = 152 bits (168), Expect = 1e-34
Identities = 151/193 (78%), Gaps = 3/193 (2%)
Strand=Plus/Minus
Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61
|||||||| | ||| | ||||||||| ||||| || |||| |||||||||||||||
Sbjct 20268350 CTTTACAAGCGGAATTGCCCTTCTTCACTCACGCAATATTGCTGGATCAGGCTTGCGCCC 20268291
Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121
||||| ||| |||||||||||||||| || || |||||| | | |||||||||| || |
Sbjct 20268290 ATTGTCCAAGATTCCCCACTGCTGCC-CCTGTGGGAGTCCAGGCTGTGTCTCAGTCCCGG 20268232
Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181
|||||||| || ||| |||| ||||| | ||| ||| || ||| ||| |||||
Sbjct 20268231 TGTGGCTGATCGTCCGAAAAGACTAGCTAAGCATCATCGGCTTGGTCAGCCTTTACCTAA 20268172
Query 182 CCAACTAGCTAAT 194
||||||| |||||
Sbjct 20268171 CCAACTACCTAAT 20268159
>seq5
Length=46902585
Score = 95.1 bits (104), Expect = 3e-17
Identities = 113/154 (73%), Gaps = 17/154 (11%)
Strand=Plus/Plus
Query 261 GGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTAC 320
||||||||| |||||||||| ||| | ||||||| ||||| ||| | | ||||
Sbjct 43673278 GGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTAC 43673337
Query 321 TCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGC 380
|||||||||||||||| ||| || || |||| |||| ||||||||
Sbjct 43673338 TCACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCGTCCGACTTGC 43673380
Query 381 ATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|||||||| || ||||||||||||||| |||||
Sbjct 43673381 ATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 43673414
>seq2
Length=52886895
Score = 89.7 bits (98), Expect = 1e-15
Identities = 60/67 (90%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 50 AGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTG 109
|||||| ||||||||| || |||||||||||||||||||||||||||||| | |||||
Sbjct 49279024 AGGCTTTCGCCCATTGCCGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTAGGCCGTG 49279083
Query 110 TCTCAGT 116
|||||||
Sbjct 49279084 TCTCAGT 49279090
>seq8
Length=41758685
Score = 84.2 bits (92), Expect = 5e-14
Identities = 87/113 (77%), Gaps = 1/113 (1%)
Strand=Plus/Plus
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
|| ||| |||| |||||||||||| |||| |||||| || |||||||| ||| || |||
Sbjct 34530622 GTCCAAGATTCTCCACTGCTGCCT-CCGTGGGAGTCCGGGCCGTGTCTTAGTCCCGGTGG 34530680
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTAC 177
|||| || ||| |||||||||| | ||| ||| || ||| ||| ||||
Sbjct 34530681 AGCTGATCGTCCGAAAAGACCAGCTAAGCATCATCGGCTTGGTCAGCCTTTAC 34530733
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1221998001536
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