Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq3 333 8e-89 seq32886 262 1e-67 seq1 132 1e-28 seq4 86.0 2e-14 seq2 86.0 2e-14 >seq3 Length=64984695 Score = 333 bits (368), Expect = 8e-89 Identities = 281/343 (82%), Gaps = 3/343 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 46735575 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 46735634 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 46735635 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 46735694 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 46735695 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 46735754 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 |||||| |||||| | || ||| | | || ||||| |||||||||| || ||| Sbjct 46735755 AGGCCTACGGGTCCTGAACTTCTTTTCCCAGAGAAGAAGCAATGACGGTATCTGGGGAAT 46735814 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| |||||||||||||||||||||| ||| || ||||||||||| Sbjct 46735815 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCG 46735874 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || ||||||| Sbjct 46735875 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 46735916 Score = 221 bits (244), Expect = 4e-55 Identities = 259/351 (74%), Gaps = 28/351 (8%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| ||| ||| |||| | || || Sbjct 30223487 ATTAGGTAGTTGGTTAGGTAAAGGCTGACCAAGCCGATGATGCTTAGCTGGTCTTTTCGG 30223546 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 |||| |||||| || |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 30223547 ACGATCAGCCACACCGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 30223606 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAAC--------GCCG------------ 327 ||| ||| ||||||||| ||||||||| |||||| ||| Sbjct 30223607 AATCTTGGACAATGGGCGCAAGCCTGATCCAGCAATAAGCGCAAGCCTGATCCAGCAATA 30223666 Query 328 ---CGTGAGCGATGAAGGCC--TTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAAT 380 |||||| || ||||| | ||| | |||||||||||| || || || | || || Sbjct 30223667 TTACGTGAGGGAAGAAGGGCAATTCCGCTCGTAAAGCTCTTTCGTCGAGTGCGCGATCAT 30223726 Query 381 GACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAG 440 ||| ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| | Sbjct 30223727 GACATGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGG 30223786 Query 441 GGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTT 491 ||||| || ||| | |||||| ||| ||||||||||| |||||| |||| Sbjct 30223787 GGGGCAAGTGTTCTTCGGAATGACT-AGGCGTAAAGGGCACGTAGGCGGTT 30223836 >seq32886 Length=360271 Score = 262 bits (290), Expect = 1e-67 Identities = 257/328 (78%), Gaps = 5/328 (2%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| ||| ||| |||| | || || Sbjct 355381 ATTAGGTAGTTGGTTAGGTAAAGGCTGACCAAGCCGATGATGCTTAGCTGGTCTTTTCGG 355440 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 |||| |||||| || |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 355441 ACGATCAGCCACACCGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 355500 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| ||||||||| |||||| ||||||| || ||||| | | Sbjct 355501 AATCTTGGACAATGGGCGCAAGCCTGATCCAGCAATATTGCGTGAGTGAAGAAGGGCAAT 355560 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 || | |||||||||||| || || | | ||| ||||| ||| ||||| ||||||| Sbjct 355561 TCCGCTCGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACATGACTCGAGGAAGAAGCCC 355620 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| | Sbjct 355621 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGGGGCAAGTGTTCTTCGGAATGA 355680 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGTT 491 || ||||||||||| |||||| |||| Sbjct 355681 CT-AGGCGTAAAGGGCACGTAGGCGGTT 355707 >seq1 Length=43764888 Score = 132 bits (146), Expect = 1e-28 Identities = 149/197 (76%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| ||| ||| |||| || || Sbjct 20268159 ATTAGGTAGTTGGTTAGGTAAAGGCTGACCAAGCCGATGATGCTTAGCTAGTCTTTTCGG 20268218 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 |||| |||||| || |||||||||| | | ||||| || || ||||||||||||| Sbjct 20268219 ACGATCAGCCACACCGGGACTGAGACACAGCCTGGACTCCCACAGG-GGCAGCAGTGGGG 20268277 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| ||||||||| |||||| ||||||| || ||||| | | Sbjct 20268278 AATCTTGGACAATGGGCGCAAGCCTGATCCAGCAATATTGCGTGAGTGAAGAAGGGCAAT 20268337 Query 346 TCGGGTCGTAAAGCTCT 362 || | | |||||||||| Sbjct 20268338 TCCGCTTGTAAAGCTCT 20268354 >seq4 Length=53719093 Score = 86.0 bits (94), Expect = 2e-14 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 407 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTG 466 |||||| |||||||||||||||||||||| ||| || ||||||||||||||| | | Sbjct 42837394 CTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCGGAATGA-TT 42837336 Query 467 GGGCGTAAAGGGTGCGTAGGTG 488 |||||||||| || ||||||| Sbjct 42837335 GGGCGTAAAGCGTCGGTAGGTG 42837314 >seq2 Length=52886895 Score = 86.0 bits (94), Expect = 2e-14 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 246 ACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCA 305 |||||||||||| | | |||||||||||||||||||||||||||| || |||||||| Sbjct 49279090 ACTGAGACACGGCCTAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTCGGCAATGGGCG 49279031 Query 306 AAAGCCT 312 ||||||| Sbjct 49279030 AAAGCCT 49279024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497107499264