Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_
202014-05-27] 32,886 sequences; 488,954,160 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq3 333 8e-89
seq32886 262 1e-67
seq1 132 1e-28
seq4 86.0 2e-14
seq2 86.0 2e-14
>seq3
Length=64984695
Score = 333 bits (368), Expect = 8e-89
Identities = 281/343 (82%), Gaps = 3/343 (1%)
Strand=Plus/Plus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
|||||||||||||||||||||| ||| || |||||||||||||| |||||||||| |
Sbjct 46735575 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 46735634
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279
| |||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||
Sbjct 46735635 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 46735694
Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339
||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | ||
Sbjct 46735695 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 46735754
Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397
|||||| |||||| | || ||| | | || ||||| |||||||||| || |||
Sbjct 46735755 AGGCCTACGGGTCCTGAACTTCTTTTCCCAGAGAAGAAGCAATGACGGTATCTGGGGAAT 46735814
Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457
|||| ||||||||| |||||||||||||||||||||| ||| || |||||||||||
Sbjct 46735815 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCG 46735874
Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
|||| | | |||||||||| || |||||||| || |||||||
Sbjct 46735875 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 46735916
Score = 221 bits (244), Expect = 4e-55
Identities = 259/351 (74%), Gaps = 28/351 (8%)
Strand=Plus/Plus
Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227
||||| |||||||| |||||| |||| |||||| ||| ||| |||| | || ||
Sbjct 30223487 ATTAGGTAGTTGGTTAGGTAAAGGCTGACCAAGCCGATGATGCTTAGCTGGTCTTTTCGG 30223546
Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287
|||| |||||| || |||||||||||| || ||||| ||||| |||||||||||||
Sbjct 30223547 ACGATCAGCCACACCGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 30223606
Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAAC--------GCCG------------ 327
||| ||| ||||||||| ||||||||| |||||| |||
Sbjct 30223607 AATCTTGGACAATGGGCGCAAGCCTGATCCAGCAATAAGCGCAAGCCTGATCCAGCAATA 30223666
Query 328 ---CGTGAGCGATGAAGGCC--TTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAAT 380
|||||| || ||||| | ||| | |||||||||||| || || || | || ||
Sbjct 30223667 TTACGTGAGGGAAGAAGGGCAATTCCGCTCGTAAAGCTCTTTCGTCGAGTGCGCGATCAT 30223726
Query 381 GACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAG 440
||| ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |
Sbjct 30223727 GACATGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGG 30223786
Query 441 GGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTT 491
||||| || ||| | |||||| ||| ||||||||||| |||||| ||||
Sbjct 30223787 GGGGCAAGTGTTCTTCGGAATGACT-AGGCGTAAAGGGCACGTAGGCGGTT 30223836
>seq32886
Length=360271
Score = 262 bits (290), Expect = 1e-67
Identities = 257/328 (78%), Gaps = 5/328 (2%)
Strand=Plus/Plus
Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227
||||| |||||||| |||||| |||| |||||| ||| ||| |||| | || ||
Sbjct 355381 ATTAGGTAGTTGGTTAGGTAAAGGCTGACCAAGCCGATGATGCTTAGCTGGTCTTTTCGG 355440
Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287
|||| |||||| || |||||||||||| || ||||| ||||| |||||||||||||
Sbjct 355441 ACGATCAGCCACACCGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 355500
Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345
||| ||| ||||||||| ||||||||| |||||| ||||||| || ||||| | |
Sbjct 355501 AATCTTGGACAATGGGCGCAAGCCTGATCCAGCAATATTGCGTGAGTGAAGAAGGGCAAT 355560
Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403
|| | |||||||||||| || || | | ||| ||||| ||| ||||| |||||||
Sbjct 355561 TCCGCTCGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACATGACTCGAGGAAGAAGCCC 355620
Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463
||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| |
Sbjct 355621 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGGGGCAAGTGTTCTTCGGAATGA 355680
Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGTT 491
|| ||||||||||| |||||| ||||
Sbjct 355681 CT-AGGCGTAAAGGGCACGTAGGCGGTT 355707
>seq1
Length=43764888
Score = 132 bits (146), Expect = 1e-28
Identities = 149/197 (76%), Gaps = 3/197 (2%)
Strand=Plus/Plus
Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227
||||| |||||||| |||||| |||| |||||| ||| ||| |||| || ||
Sbjct 20268159 ATTAGGTAGTTGGTTAGGTAAAGGCTGACCAAGCCGATGATGCTTAGCTAGTCTTTTCGG 20268218
Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287
|||| |||||| || |||||||||| | | ||||| || || |||||||||||||
Sbjct 20268219 ACGATCAGCCACACCGGGACTGAGACACAGCCTGGACTCCCACAGG-GGCAGCAGTGGGG 20268277
Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345
||| ||| ||||||||| ||||||||| |||||| ||||||| || ||||| | |
Sbjct 20268278 AATCTTGGACAATGGGCGCAAGCCTGATCCAGCAATATTGCGTGAGTGAAGAAGGGCAAT 20268337
Query 346 TCGGGTCGTAAAGCTCT 362
|| | | ||||||||||
Sbjct 20268338 TCCGCTTGTAAAGCTCT 20268354
>seq4
Length=53719093
Score = 86.0 bits (94), Expect = 2e-14
Identities = 69/82 (84%), Gaps = 1/82 (1%)
Strand=Plus/Minus
Query 407 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTG 466
|||||| |||||||||||||||||||||| ||| || ||||||||||||||| | |
Sbjct 42837394 CTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCGGAATGA-TT 42837336
Query 467 GGGCGTAAAGGGTGCGTAGGTG 488
|||||||||| || |||||||
Sbjct 42837335 GGGCGTAAAGCGTCGGTAGGTG 42837314
>seq2
Length=52886895
Score = 86.0 bits (94), Expect = 2e-14
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 246 ACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCA 305
|||||||||||| | | |||||||||||||||||||||||||||| || ||||||||
Sbjct 49279090 ACTGAGACACGGCCTAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTCGGCAATGGGCG 49279031
Query 306 AAAGCCT 312
|||||||
Sbjct 49279030 AAAGCCT 49279024
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1497107499264
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |