Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq3 277 4e-72 seq32886 210 5e-52 seq628 122 2e-25 seq4 98.7 2e-18 seq936 84.2 5e-14 seq2 82.4 2e-13 seq6 73.4 1e-10 >seq3 Length=64984695 Score = 277 bits (306), Expect = 4e-72 Identities = 306/405 (76%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||||||||||||||||||| ||| || ||| Sbjct 46735807 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 46735866 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 46735867 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 46735926 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 46735927 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTTGAGTACGGTAGGGGCA 46735986 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 46735987 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 46736046 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 46736047 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 46736106 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| |||||||| | | | ||| || | Sbjct 46736107 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 46736165 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 46736166 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 46736210 Score = 125 bits (138), Expect = 2e-26 Identities = 156/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 30223733 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGGGGCA 30223792 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||| ||||||||||| |||||| |||| | || | ||| Sbjct 30223793 AGTGTTCTTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGTTCATCGGGTTGAAAGTG 30223852 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 |||| | | | || | ||| |||||| ||||| | | || ||||| || Sbjct 30223853 AAAGTC---GTCAAAAAGTGGCGGAATGCTTTCGAAACCACTGAACTTGAGTGAGACAGA 30223909 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAAT 212 || ||||||||| | ||| || |||||||| Sbjct 30223910 GGAGAGTGGAATTTCGTGTGGAGGGGTGAAAT 30223941 Score = 84.2 bits (92), Expect = 5e-14 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 252 TGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACC 311 |||||| | | |||||||||||| ||||||| ||||||| | |||||||||||| Sbjct 30222160 TGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGATTGGGATTAGATACC 30222101 Query 312 CTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345 | ||||||| |||||||||||| |||||||| Sbjct 30222100 CCAGTAGTCCTACCCGTAAACGATGGATACTAGG 30222067 >seq32886 Length=360271 Score = 210 bits (232), Expect = 5e-52 Identities = 252/338 (75%), Gaps = 6/338 (2%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 355604 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGGGGCA 355663 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||| ||||||||||| |||||| |||| | || | ||| Sbjct 355664 AGTGTTCTTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGTTCATCGGGTTGAAAGTG 355723 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 |||| | | | || | ||| |||||| ||||| | | || ||||| || Sbjct 355724 AAAGTC---GTCAAAAAGTGGCGGAATGCTTTCGAAACCACTGAACTTGAGTGAGACAGA 355780 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 || ||||||||| | ||| || |||||||| ||| | | |||||| ||| | Sbjct 355781 GGAGAGTGGAATTTCGTGTGGAGGGGTGAAATCTACGGATCTACGAAGGAACGCCAAAAG 355840 Query 241 CGAAGGCGGCTTGCTGGA-CTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299 ||||||| ||| |||| || || | ||| ||| | ||||||| |||||||| ||| Sbjct 355841 CGAAGGCAGCTCTCTGGGTCTCTACC-GACGCTGGTGTGCGAAAGCATGGGGAGCGAACG 355899 Query 300 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||||||||||||||||||| |||||||||||||| Sbjct 355900 GGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 355937 >seq628 Length=9137 Score = 122 bits (134), Expect = 2e-25 Identities = 137/181 (76%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 229 GAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTG 288 |||||||| |||||| || |||||| | | |||||||||||| ||||||| | Sbjct 4821 GAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAG 4762 Query 289 GGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGT 348 |||||| || ||||||||||||| ||||||| ||||||||||||| |||||||| | Sbjct 4761 GGGAGCGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG- 4703 Query 349 CGGGGCGCAT-AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGT 407 | | ||| || | | | |||| | ||| ||||| ||||||| || |||||||||| Sbjct 4702 CTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGT 4643 Query 408 A 408 | Sbjct 4642 A 4642 >seq4 Length=53719093 Score = 98.7 bits (108), Expect = 2e-18 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 229 GAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTG 288 |||||||| |||||| || |||||| | | |||||||||||| ||||||| | Sbjct 21790533 GAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAG 21790474 Query 289 GGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345 |||||| || |||||||||||| ||||||| ||||||||||||| |||||||| Sbjct 21790473 GGGAGCGAATGAGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGG 21790417 Score = 93.3 bits (102), Expect = 1e-16 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 22 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTG 81 |||||| |||||||||||||||||||||| ||| || ||||||||||||||| | || Sbjct 42837394 CTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCGGAATGATTG 42837335 Query 82 GGCGTAAAGGGTGCGTAGGTG 102 ||||||||| || ||||||| Sbjct 42837334 GGCGTAAAGCGTCGGTAGGTG 42837314 >seq936 Length=4617 Score = 84.2 bits (92), Expect = 5e-14 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 |||||||| | |||| | | |||| || ||| ||||||| || |||||||||| Sbjct 3347 GAATTCCTGGAGTAGAGATAAAATTTGTTAATACCAGGAGGACTGTCAACGGCGAAGGCG 3288 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 | | || |||||||| |||| |||| || |||| |||||| |||||||||| Sbjct 3287 ACCTTCTATGTAATAACTGACGTTGAGAGACGAAGGCTTGGGTAGCAAATAGGATTAGAT 3228 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAAT 339 ||||| ||||||| || | || ||||||| Sbjct 3227 ACCCTACTAGTCCAAGCAGACAATGATGAAT 3197 >seq2 Length=52886895 Score = 82.4 bits (90), Expect = 2e-13 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 280 GAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 |||||| |||||||| ||| ||||||||||||||||||||||| ||| |||||||||| Sbjct 27861625 GAAAGCATGGGGAGCGAACGGGATTAGATACCCTGGTAGTCCATGCCTTAAACGATGA 27861568 >seq6 Length=39822476 Score = 73.4 bits (80), Expect = 1e-10 Identities = 42/43 (98%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 295 AAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 |||||||||||||||||||||||||||| |||||||||||||| Sbjct 24928310 AAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 24928352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202804315648