Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_
202014-05-27] 32,886 sequences; 488,954,160 total letters
Query= AAMG01002183.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
seq3 277 4e-72
seq32886 210 5e-52
seq628 122 2e-25
seq4 98.7 2e-18
seq936 84.2 5e-14
seq2 82.4 2e-13
seq6 73.4 1e-10
>seq3
Length=64984695
Score = 277 bits (306), Expect = 4e-72
Identities = 306/405 (76%), Gaps = 2/405 (0%)
Strand=Plus/Plus
Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64
|| ||| |||| ||||||||| |||||||||||||||||||||| ||| || |||
Sbjct 46735807 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 46735866
Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124
|||||||||||| | ||||||||||| || |||||||| || ||||||| | || |||
Sbjct 46735867 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 46735926
Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184
| | |||||||||| || || | |||||| | ||| |||| | | |||||||
Sbjct 46735927 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTTGAGTACGGTAGGGGCA 46735986
Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244
|||||| | ||| |||||||||||||||||| || | | |||||||| ||||||
Sbjct 46735987 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 46736046
Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304
|| |||||| | | |||||||||||| ||||||| ||||||| || |||||
Sbjct 46736047 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 46736106
Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363
|||||||| ||||||| ||||||||||||| |||||||| | | | ||| || |
Sbjct 46736107 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 46736165
Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408
| | |||| | ||| ||||| ||||||| || |||||||||||
Sbjct 46736166 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 46736210
Score = 125 bits (138), Expect = 2e-26
Identities = 156/212 (74%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61
||| ||||| |||||||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct 30223733 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGGGGCA 30223792
Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121
|| ||| | |||||| ||| ||||||||||| |||||| |||| | || | |||
Sbjct 30223793 AGTGTTCTTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGTTCATCGGGTTGAAAGTG 30223852
Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180
|||| | | | || | ||| |||||| ||||| | | || ||||| ||
Sbjct 30223853 AAAGTC---GTCAAAAAGTGGCGGAATGCTTTCGAAACCACTGAACTTGAGTGAGACAGA 30223909
Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAAT 212
|| ||||||||| | ||| || ||||||||
Sbjct 30223910 GGAGAGTGGAATTTCGTGTGGAGGGGTGAAAT 30223941
Score = 84.2 bits (92), Expect = 5e-14
Identities = 75/94 (80%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 252 TGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACC 311
|||||| | | |||||||||||| ||||||| ||||||| | ||||||||||||
Sbjct 30222160 TGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGATTGGGATTAGATACC 30222101
Query 312 CTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345
| ||||||| |||||||||||| ||||||||
Sbjct 30222100 CCAGTAGTCCTACCCGTAAACGATGGATACTAGG 30222067
>seq32886
Length=360271
Score = 210 bits (232), Expect = 5e-52
Identities = 252/338 (75%), Gaps = 6/338 (2%)
Strand=Plus/Plus
Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61
||| ||||| |||||||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct 355604 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGGGGCA 355663
Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121
|| ||| | |||||| ||| ||||||||||| |||||| |||| | || | |||
Sbjct 355664 AGTGTTCTTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGTTCATCGGGTTGAAAGTG 355723
Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180
|||| | | | || | ||| |||||| ||||| | | || ||||| ||
Sbjct 355724 AAAGTC---GTCAAAAAGTGGCGGAATGCTTTCGAAACCACTGAACTTGAGTGAGACAGA 355780
Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240
|| ||||||||| | ||| || |||||||| ||| | | |||||| ||| |
Sbjct 355781 GGAGAGTGGAATTTCGTGTGGAGGGGTGAAATCTACGGATCTACGAAGGAACGCCAAAAG 355840
Query 241 CGAAGGCGGCTTGCTGGA-CTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299
||||||| ||| |||| || || | ||| ||| | ||||||| |||||||| |||
Sbjct 355841 CGAAGGCAGCTCTCTGGGTCTCTACC-GACGCTGGTGTGCGAAAGCATGGGGAGCGAACG 355899
Query 300 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337
||||||||||||||||||||||| ||||||||||||||
Sbjct 355900 GGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 355937
>seq628
Length=9137
Score = 122 bits (134), Expect = 2e-25
Identities = 137/181 (76%), Gaps = 2/181 (1%)
Strand=Plus/Minus
Query 229 GAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTG 288
|||||||| |||||| || |||||| | | |||||||||||| ||||||| |
Sbjct 4821 GAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAG 4762
Query 289 GGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGT 348
|||||| || ||||||||||||| ||||||| ||||||||||||| |||||||| |
Sbjct 4761 GGGAGCGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG- 4703
Query 349 CGGGGCGCAT-AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGT 407
| | ||| || | | | |||| | ||| ||||| ||||||| || ||||||||||
Sbjct 4702 CTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGT 4643
Query 408 A 408
|
Sbjct 4642 A 4642
>seq4
Length=53719093
Score = 98.7 bits (108), Expect = 2e-18
Identities = 92/117 (79%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 229 GAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTG 288
|||||||| |||||| || |||||| | | |||||||||||| ||||||| |
Sbjct 21790533 GAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAG 21790474
Query 289 GGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345
|||||| || |||||||||||| ||||||| ||||||||||||| ||||||||
Sbjct 21790473 GGGAGCGAATGAGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGG 21790417
Score = 93.3 bits (102), Expect = 1e-16
Identities = 69/81 (85%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 22 CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTG 81
|||||| |||||||||||||||||||||| ||| || ||||||||||||||| | ||
Sbjct 42837394 CTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCGGAATGATTG 42837335
Query 82 GGCGTAAAGGGTGCGTAGGTG 102
||||||||| || |||||||
Sbjct 42837334 GGCGTAAAGCGTCGGTAGGTG 42837314
>seq936
Length=4617
Score = 84.2 bits (92), Expect = 5e-14
Identities = 109/151 (72%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248
|||||||| | |||| | | |||| || ||| ||||||| || ||||||||||
Sbjct 3347 GAATTCCTGGAGTAGAGATAAAATTTGTTAATACCAGGAGGACTGTCAACGGCGAAGGCG 3288
Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308
| | || |||||||| |||| |||| || |||| |||||| ||||||||||
Sbjct 3287 ACCTTCTATGTAATAACTGACGTTGAGAGACGAAGGCTTGGGTAGCAAATAGGATTAGAT 3228
Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAAT 339
||||| ||||||| || | || |||||||
Sbjct 3227 ACCCTACTAGTCCAAGCAGACAATGATGAAT 3197
>seq2
Length=52886895
Score = 82.4 bits (90), Expect = 2e-13
Identities = 53/58 (91%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 280 GAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337
|||||| |||||||| ||| ||||||||||||||||||||||| ||| ||||||||||
Sbjct 27861625 GAAAGCATGGGGAGCGAACGGGATTAGATACCCTGGTAGTCCATGCCTTAAACGATGA 27861568
>seq6
Length=39822476
Score = 73.4 bits (80), Expect = 1e-10
Identities = 42/43 (98%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 295 AAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337
|||||||||||||||||||||||||||| ||||||||||||||
Sbjct 24928310 AAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 24928352
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1202804315648
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |