Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_
202014-05-27] 32,886 sequences; 488,954,160 total letters
Query= AAMG01002193.1
Length=560
Score E
Sequences producing significant alignments: (Bits) Value
seq32886 179 1e-42
seq216 116 1e-23
seq6 78.8 3e-12
>seq32886
Length=360271
Score = 179 bits (198), Expect = 1e-42
Identities = 322/461 (70%), Gaps = 26/461 (6%)
Strand=Plus/Minus
Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93
||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| ||||
Sbjct 83211 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 83152
Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153
|| |||||||||| |||| | ||||| |||||||| ||||| ||||||||||||||
Sbjct 83151 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 83092
Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213
|| ||| | ||| |||||||||| || ||||| |||||| |||| || | | ||
Sbjct 83091 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 83034
Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG---TCATTGCGACTTACCAAAC 267
| || | | ||||||||||| |||||||| | |||| || |||||||| |
Sbjct 83033 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACC 82974
Query 268 CATTGCAAACTCCGAATGC--GC----ATCAGTTTTACCGCGGGAGTGAGGGCATGGGTG 321
| | ||||||||||| | || || || ||| | || | | |||||
Sbjct 82973 CCAGGGAAACTCCGAATACAGGCCGTTCTCGTTTGTACAGACAGACTTTTG----GGGTG 82918
Query 322 CTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACA 381
||||| ||| ||||||| || | || || | ||||||| ||| || |
Sbjct 82917 CTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATC 82858
Query 382 GCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAGC 439
|| ||| || || |||| |||| || | |||| | |||| || |||||||||||
Sbjct 82857 ACTTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGC 82802
Query 440 AGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480
||||| || ||| |||| |||||| |||||||| ||| ||
Sbjct 82801 AGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 82762
Score = 179 bits (198), Expect = 1e-42
Identities = 322/461 (70%), Gaps = 26/461 (6%)
Strand=Plus/Minus
Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93
||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| ||||
Sbjct 253243 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 253184
Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153
|| |||||||||| |||| | ||||| |||||||| ||||| ||||||||||||||
Sbjct 253183 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 253124
Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213
|| ||| | ||| |||||||||| || ||||| |||||| |||| || | | ||
Sbjct 253123 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 253066
Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG---TCATTGCGACTTACCAAAC 267
| || | | ||||||||||| |||||||| | |||| || |||||||| |
Sbjct 253065 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACC 253006
Query 268 CATTGCAAACTCCGAATGC--GC----ATCAGTTTTACCGCGGGAGTGAGGGCATGGGTG 321
| | ||||||||||| | || || || ||| | || | | |||||
Sbjct 253005 CCAGGGAAACTCCGAATACAGGCCGTTCTCGTTTGTACAGACAGACTTTTG----GGGTG 252950
Query 322 CTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACA 381
||||| ||| ||||||| || | || || | ||||||| ||| || |
Sbjct 252949 CTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATC 252890
Query 382 GCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAGC 439
|| ||| || || |||| |||| || | |||| | |||| || |||||||||||
Sbjct 252889 ACTTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGC 252834
Query 440 AGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480
||||| || ||| |||| |||||| |||||||| ||| ||
Sbjct 252833 AGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 252794
>seq216
Length=33545
Score = 116 bits (128), Expect = 1e-23
Identities = 164/224 (73%), Gaps = 6/224 (3%)
Strand=Plus/Minus
Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395
||||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | |
Sbjct 31675 CGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--A 31618
Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455
| || || | ||| ||||||| |||| ||| || | |||||||||| | || ||||
Sbjct 31617 AGGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAG 31559
Query 456 AGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTG 515
||||||||| |||||||| ||||| || ||| || || | |||| ||||
Sbjct 31558 AGTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGA 31500
Query 516 TCTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558
||| ||||||| ||||||| | | ||| ||||||||||||||
Sbjct 31499 TCTGCCGAAGCTGTGGGAT-GTCAAAATGCATCGGTAGGGGAGC 31457
Score = 116 bits (128), Expect = 1e-23
Identities = 164/224 (73%), Gaps = 6/224 (3%)
Strand=Plus/Plus
Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395
||||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | |
Sbjct 31882 CGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--A 31939
Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455
| || || | ||| ||||||| |||| ||| || | |||||||||| | || ||||
Sbjct 31940 AGGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAG 31998
Query 456 AGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTG 515
||||||||| |||||||| ||||| || ||| || || | |||| ||||
Sbjct 31999 AGTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGA 32057
Query 516 TCTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558
||| ||||||| ||||||| | | ||| ||||||||||||||
Sbjct 32058 TCTGCCGAAGCTGTGGGAT-GTCAAAATGCATCGGTAGGGGAGC 32100
>seq6
Length=39822476
Score = 78.8 bits (86), Expect = 3e-12
Identities = 67/83 (81%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 105 ACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTG 164
||| |||||||||||| || ||||||| ||||| ||||||||||| || | | |||
Sbjct 8321177 ACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCA 8321118
Query 165 GAAATAGCTGGTTCTCTCCGAAA 187
|| |||||||||||| ||||||
Sbjct 8321117 GAGCTAGCTGGTTCTCCCCGAAA 8321095
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1689044358144
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |