Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq32886 80.6 5e-13 >seq32886 Length=360271 Score = 80.6 bits (88), Expect = 5e-13 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||||||||||| ||||| |||||||||||||| || ||||| Sbjct 83824 GCGAACTGAAACATCTAAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 83765 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 83764 GGCGAGCGAGAGCGGAT 83748 Score = 80.6 bits (88), Expect = 5e-13 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||||||||||| ||||| |||||||||||||| || ||||| Sbjct 253856 GCGAACTGAAACATCTAAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 253797 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 253796 GGCGAGCGAGAGCGGAT 253780 Score = 73.4 bits (80), Expect = 7e-11 Identities = 141/202 (70%), Gaps = 12/202 (6%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAA-GCTGCGG 68 ||||||| || ||| | || ||| |||| ||||||| ||| || ||| ||| Sbjct 322438 GGTGGATACCAAGGCACCCAGAGACGAGGAAGAGCGTAGTAAGCGACGAAAATGCTTCGG 322379 Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGG 128 ||||| | ||| | | | |||||| ||||| | |||| || |||| |||| Sbjct 322378 GGAGTT-GAAAATAAGCGTAGATCCGGAGATTCCGGAATAGGTTAACCT-----TTTGA- 322326 Query 129 TCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAG 187 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| | Sbjct 322325 --ACTGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAC 322269 Query 188 TAGCTGCAGGAAAAGAAATCAA 209 |||| ||||||||||| ||| Sbjct 322268 TAGCCAGAGGAAAAGAAAGCAA 322247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918097974976