Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_
202014-05-27] 32,886 sequences; 488,954,160 total letters
Query= AAMG01002194.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq32886 80.6 5e-13
>seq32886
Length=360271
Score = 80.6 bits (88), Expect = 5e-13
Identities = 64/77 (83%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228
|||||||||||||||||||||||| ||||| |||||||||||||| || |||||
Sbjct 83824 GCGAACTGAAACATCTAAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 83765
Query 229 GGCGAGCGAAATGGGAT 245
||||||||| | ||||
Sbjct 83764 GGCGAGCGAGAGCGGAT 83748
Score = 80.6 bits (88), Expect = 5e-13
Identities = 64/77 (83%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228
|||||||||||||||||||||||| ||||| |||||||||||||| || |||||
Sbjct 253856 GCGAACTGAAACATCTAAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 253797
Query 229 GGCGAGCGAAATGGGAT 245
||||||||| | ||||
Sbjct 253796 GGCGAGCGAGAGCGGAT 253780
Score = 73.4 bits (80), Expect = 7e-11
Identities = 141/202 (70%), Gaps = 12/202 (6%)
Strand=Plus/Minus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAA-GCTGCGG 68
||||||| || ||| | || ||| |||| ||||||| ||| || ||| |||
Sbjct 322438 GGTGGATACCAAGGCACCCAGAGACGAGGAAGAGCGTAGTAAGCGACGAAAATGCTTCGG 322379
Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGG 128
||||| | ||| | | | |||||| ||||| | |||| || |||| ||||
Sbjct 322378 GGAGTT-GAAAATAAGCGTAGATCCGGAGATTCCGGAATAGGTTAACCT-----TTTGA- 322326
Query 129 TCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAG 187
| ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| |
Sbjct 322325 --ACTGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAC 322269
Query 188 TAGCTGCAGGAAAAGAAATCAA 209
|||| ||||||||||| |||
Sbjct 322268 TAGCCAGAGGAAAAGAAAGCAA 322247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 918097974976
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |