Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_
202014-05-27] 32,886 sequences; 488,954,160 total letters
Query= AAMG01002207.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
seq216 197 5e-48
seq32886 187 8e-45
seq8 187 8e-45
seq3 185 3e-44
seq15 100 1e-18
>seq216
Length=33545
Score = 197 bits (218), Expect = 5e-48
Identities = 393/570 (69%), Gaps = 23/570 (4%)
Strand=Plus/Plus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
||||| || |||| |||||||||||||||| ||| || ||||| | || ||
Sbjct 30290 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 30349
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
|| | | |||| |||||||| |||||||||||| |||||||||| | || ||||||
Sbjct 30350 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 30408
Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177
||||| | ||| | |||||||| || || || || |||||||||| ||
Sbjct 30409 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 30468
Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCAT 234
| | ||||||||||| ||| | | ||| | | || || | |||| |
Sbjct 30469 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAG-GAGGCCT--T 30525
Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292
| | | || ||||||| || | || || || | || |||||| ||| | | ||||
Sbjct 30526 CTTCGCCTTCCACCTAAGCTGCGCAGGAAAAGCCC--AAAGCCAATCCCAGGGAACAGTG 30583
Query 293 AAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAA 351
||| | | |||||||| |||| | || | | ||||||| || | | |
Sbjct 30584 AAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTA 30643
Query 352 TTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGG 410
|||||||| |||| | ||||||| | || |||||||||| ||||||| ||||||
Sbjct 30644 TTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGG 30702
Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 30703 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 30762
Query 471 TGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTT 530
|||||||| | ||| ||| || || | | |||| | ||| |||||
Sbjct 30763 CGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTT 30816
Query 531 CCAGCACCGGGCAGGCGTCAGTCCGTATAC 560
|| |||| ||||||||||||| || ||||
Sbjct 30817 CCGGCACTGGGCAGGCGTCAGCCCCCATAC 30846
Score = 122 bits (134), Expect = 3e-25
Identities = 150/201 (75%), Gaps = 3/201 (1%)
Strand=Plus/Minus
Query 267 CCGAATGCCAATACCAAGCTATAGTGAAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGA 325
|| || |||||| ||| | | ||||||| | | |||||||| |||| | || |
Sbjct 32901 CCCAAAGCCAATCCCAGGGAACAGTGAAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGT 32842
Query 326 AACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG 385
| ||||||| || | | ||||||||| |||| | ||||||| | ||
Sbjct 32841 AGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAG 32783
Query 386 -TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 444
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 32782 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 32723
Query 445 TGGTTATAGTTACCACCGCCG 465
||||||||||| ||||||
Sbjct 32722 CCGTTATAGTTACGGCCGCCG 32702
>seq32886
Length=360271
Score = 187 bits (206), Expect = 8e-45
Identities = 236/325 (73%), Gaps = 17/325 (5%)
Strand=Plus/Plus
Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299
||||||||||||||||||| | | || || | | |||||||||||||||| |
Sbjct 81579 CTCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTGAAGGTGCA 81638
Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359
||||||||| |||| |||| | | ||||||| || | | ||||||||| |
Sbjct 81639 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACTG 81698
Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419
|| | || |||||||| ||| ||||||||| |||||||||||||||| ||||| |
Sbjct 81699 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 81758
Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479
||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||||
Sbjct 81759 GACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTC 81818
Query 480 AATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCG 539
||| || | | | ||| | |||| || || |||||||||||
Sbjct 81819 CATTCAAAGCTT---ATAACACTT-------------CTCCTTTTGACTTTCCAGCACCG 81862
Query 540 GGCAGGCGTCAGTCCGTATACCTCG 564
|||||| ||||| | ||||| |||
Sbjct 81863 GGCAGGTGTCAGACTCTATACATCG 81887
Score = 187 bits (206), Expect = 8e-45
Identities = 236/325 (73%), Gaps = 17/325 (5%)
Strand=Plus/Plus
Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299
||||||||||||||||||| | | || || | | |||||||||||||||| |
Sbjct 251611 CTCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTGAAGGTGCA 251670
Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359
||||||||| |||| |||| | | ||||||| || | | ||||||||| |
Sbjct 251671 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACTG 251730
Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419
|| | || |||||||| ||| ||||||||| |||||||||||||||| ||||| |
Sbjct 251731 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 251790
Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479
||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||||
Sbjct 251791 GACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTC 251850
Query 480 AATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCG 539
||| || | | | ||| | |||| || || |||||||||||
Sbjct 251851 CATTCAAAGCTT---ATAACACTT-------------CTCCTTTTGACTTTCCAGCACCG 251894
Query 540 GGCAGGCGTCAGTCCGTATACCTCG 564
|||||| ||||| | ||||| |||
Sbjct 251895 GGCAGGTGTCAGACTCTATACATCG 251919
>seq8
Length=41758685
Score = 187 bits (206), Expect = 8e-45
Identities = 236/325 (73%), Gaps = 17/325 (5%)
Strand=Plus/Minus
Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299
||||||||||||||||||| | | || || | | |||||||||||||||| |
Sbjct 33278432 CTCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTGAAGGTGCA 33278373
Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359
||||||||| |||| |||| | | ||||||| || | | ||||||||| |
Sbjct 33278372 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACTG 33278313
Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419
|| | || |||||||| ||| ||||||||| |||||||||||||||| ||||| |
Sbjct 33278312 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 33278253
Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479
||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||||
Sbjct 33278252 GACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTC 33278193
Query 480 AATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCG 539
||| || | | | ||| | |||| || || |||||||||||
Sbjct 33278192 CATTCAAAGCTT---ATAACACTT-------------CTCCTTTTGACTTTCCAGCACCG 33278149
Query 540 GGCAGGCGTCAGTCCGTATACCTCG 564
|||||| ||||| | ||||| |||
Sbjct 33278148 GGCAGGTGTCAGACTCTATACATCG 33278124
>seq3
Length=64984695
Score = 185 bits (204), Expect = 3e-44
Identities = 188/244 (77%), Gaps = 1/244 (0%)
Strand=Plus/Minus
Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299
||||||||||||||||||| | | || || | | |||||||||||||||| |
Sbjct 37540528 CTCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTGAAGGTGCA 37540469
Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359
||||||||| |||| |||| | | ||||||| || | | ||||||||| |
Sbjct 37540468 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACTG 37540409
Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419
|| | || |||||||| ||| ||||||||| |||||||||||||||| ||||| |
Sbjct 37540408 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 37540349
Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479
||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||||
Sbjct 37540348 GACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTC 37540289
Query 480 AATT 483
|||
Sbjct 37540288 CATT 37540285
>seq15
Length=215938
Score = 100 bits (110), Expect = 1e-18
Identities = 76/90 (84%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 349 CAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTC 408
||||||||| ||| | || |||||||| ||| ||||||||| |||||||||||||||
Sbjct 56758 CAATTTCACTGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTC 56817
Query 409 GGAACTTACCCGACAAGGAATTTCGCTACC 438
| ||||| ||||||||||||||||||||
Sbjct 56818 GCTACTTATGCGACAAGGAATTTCGCTACC 56847
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1701840148736
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