Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_
202014-05-27] 32,886 sequences; 488,954,160 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq3 127 4e-27
seq32886 111 3e-22
seq2 77.0 7e-12
>seq3
Length=64984695
Score = 127 bits (140), Expect = 4e-27
Identities = 195/279 (70%), Gaps = 18/279 (6%)
Strand=Plus/Minus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| || ||| || |
Sbjct 46735843 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCGTCAT-----------T 46735795
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| || ||| || |||||||||| | | |||||| ||||| ||| |||||
Sbjct 46735794 GC------TTCTTCTCTGGGAAAAGAAGTTCAGGACCCGTAGG-CCTTCTACCTCCACGC 46735742
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | ||| |||| || ||| |||||| || ||||| ||||||||||||||||||
Sbjct 46735741 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 46735682
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| ||
Sbjct 46735681 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 46735622
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| | | || ||| || || || | || |||| |||||
Sbjct 46735621 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 46735583
Score = 104 bits (114), Expect = 5e-20
Identities = 129/177 (73%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 127 GCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTT 186
||||| |||| || || |||||| |||| ||||| |||||||||| ||||| |||||
Sbjct 30223639 GCTGGATCAGGCTTGCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 30223580
Query 187 GGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGG 246
|| |||||||||||| || ||||| || | ||| ||| | ||| |||| | ||
Sbjct 30223579 GGGCCGTGTCTCAGTCCCGGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATCGG 30223520
Query 247 CTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACACCG 303
|| ||| ||| ||||| || |||||||||| ||||| | |||| ||| ||
Sbjct 30223519 CTTGGTCAGCCTTTACCTAACCAACTACCTAATACTACGCAGGCTCATCAAACAGCG 30223463
>seq32886
Length=360271
Score = 111 bits (122), Expect = 3e-22
Identities = 144/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164
||||| || |||||| | | ||||| |||| || || |||||| |||| ||||| ||
Sbjct 355555 CCTTCTTCACTCACGCAATATTGCTGGATCAGGCTTGCGCCCATTGTCCAAGATTCCCCA 355496
Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224
|||||||| ||||| ||||| || |||||||||||| || ||||| || | |||
Sbjct 355495 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCGGTGTGGCTGATCGTCCGAA 355436
Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284
||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| ||
Sbjct 355435 AAGACCAGCTAAGCATCATCGGCTTGGTCAGCCTTTACCTAACCAACTACCTAATACTAC 355376
Query 285 GCATCCCCATCGTACACCG 303
||| | |||| ||| ||
Sbjct 355375 GCAGGCTCATCAAACAGCG 355357
>seq2
Length=52886895
Score = 77.0 bits (84), Expect = 7e-12
Identities = 57/67 (85%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 135 AGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTG 194
|| || ||| |||||| | || ||||| |||||||||||||||||||||| | | |||||
Sbjct 49279024 AGGCTTTCGCCCATTGCCGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTAGGCCGTG 49279083
Query 195 TCTCAGT 201
|||||||
Sbjct 49279084 TCTCAGT 49279090
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1068448514432
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |