Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq21761 241 2e-61 seq736 226 5e-57 seq22 107 3e-21 seq10 107 3e-21 seq2 102 1e-19 seq1394 98.7 2e-18 seq57 93.3 7e-17 seq15685 91.5 2e-16 seq20 91.5 2e-16 seq11979 89.7 8e-16 seq77 84.2 4e-14 >seq21761 Length=303 Score = 241 bits (266), Expect = 2e-61 Identities = 177/201 (88%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||| Sbjct 230 GTACGAGAGGAACCGTTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 173 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct 172 GCCGCGACGCTACCATCTGCCGGATTATGGCTGAACGCCTCTAAGTCAGAATCCGTGCCG 113 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTC-GGCCCCGA 178 ||||| || |||| | || |||| ||||||| ||||||||||||| |||| |||| | Sbjct 112 GAACGCGGCGATTTTGCCCCGCACGTCGTAGTTGGATACGAATAGGCCTTCGGGCCATGC 53 Query 179 ACCTTAGCAGGCCGGCAACGG 199 |||| ||||||| ||| |||| Sbjct 52 ACCTCAGCAGGCTGGCGACGG 32 >seq736 Length=7293 Score = 226 bits (250), Expect = 5e-57 Identities = 227/288 (79%), Gaps = 24/288 (8%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| |||||||||||||||| |||| |||| |||||| Sbjct 6860 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGTTGTCCGACCGGGCAGT 6917 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 6918 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCG 6977 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| || ||| | |||| |||| |||| |||||| |||||||| ||||| || | Sbjct 6978 GAACGCGGCGATAC-CTCCCGCACGCTGTAGGCGGATAAGAATAGGCCCCGGCCTCGCAT 7036 Query 181 CTTAGCAGG------CCGGCAACGGGCGTCCCGCGGAAGCGC---GGGGCGCTCAGCTGG 231 | ||||||| || || ||||| |||| || | |||| | | | Sbjct 7037 CCTAGCAGGCGATTCCCCCCACCGGGC------TAGAAGTGCCCGGTGGCGTT----TCG 7086 Query 232 CGGATTGCAATTTCACCATGCGCAGGGAT-AAATCCTTTGCAGACGAC 278 || |||| ||||| || |||| ||||| |||||||||||||||||| Sbjct 7087 CGTATTGTAATTTGGGCACGCGC-GGGATCAAATCCTTTGCAGACGAC 7133 >seq22 Length=192287 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 60104 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 60161 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 60162 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 60221 Query 121 GAA 123 ||| Sbjct 60222 GAA 60224 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 83626 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 83683 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 83684 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 83743 Query 121 GAA 123 ||| Sbjct 83744 GAA 83746 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 130411 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 130468 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 130469 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 130528 Query 121 GAA 123 ||| Sbjct 130529 GAA 130531 Score = 107 bits (118), Expect = 3e-21 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || || | | ||||||| | ||| || ||| || |||| Sbjct 137481 GTACGAGAGGAACCGTCGATTT--GCACAATTGGTCATCGCGCTTGGTTGAAAAGACAGT 137538 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 137539 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 137598 Query 121 GAA 123 ||| Sbjct 137599 GAA 137601 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | |||| || | ||| || ||| || |||| Sbjct 21510 GTACGAGAGGAACCGTTGA-TTC-GCACAATTAGTCATCGCGCTTGGTTGAAAAGCCAGT 21567 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||| | | ||||||||||| ||| |||||||||||||||||||| || | Sbjct 21568 GGCGCGAAGCTATCGTGCGCTGGATTATGACTGGACGCCTCTAAGTCAGAATCCGGGCTA 21627 Query 121 GAA 123 ||| Sbjct 21628 GAA 21630 >seq10 Length=550871 Score = 107 bits (118), Expect = 3e-21 Identities = 101/126 (80%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 83777 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 83834 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 83835 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGAGCTA 83894 Query 121 GAACGG 126 ||| || Sbjct 83895 GAAGGG 83900 Score = 102 bits (112), Expect = 1e-19 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| | ||| || |||| Sbjct 17729 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCGTCGCGCTTTGTTGAAAAGCCAGT 17786 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 17787 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 17846 Query 121 GAA 123 ||| Sbjct 17847 GAA 17849 >seq2 Length=52886895 Score = 102 bits (112), Expect = 1e-19 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||| | | ||||||| | ||| || ||| || |||| Sbjct 45063314 GTACGAGAGGAACCG-GTTATTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 45063371 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||| ||| || | Sbjct 45063372 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGACTCCGGGCTA 45063431 Query 121 GAA 123 ||| Sbjct 45063432 GAA 45063434 >seq1394 Length=2068 Score = 98.7 bits (108), Expect = 2e-18 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 1398 GTAAGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1455 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| ||||||| |||||||||||||||| || | Sbjct 1456 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGTCTCTAAGTCAGAATCCGGGCTA 1515 Query 121 GAA 123 ||| Sbjct 1516 GAA 1518 >seq57 Length=90757 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||| ||||| || ||| | | ||||||| ||| || ||| || |||| Sbjct 57514 GTACGAGAGAAACCGTTGA-TTC-GCACAATTGGTCACCGCGCTTGGTTGAAAAGCCAGT 57571 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||||| || | ||||||||||| |||||||||||||||||||||||| || | Sbjct 57572 GACGCGAAGCTTCCGTTCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 57631 Query 121 GAA 123 ||| Sbjct 57632 GAA 57634 Score = 77.0 bits (84), Expect = 5e-12 Identities = 90/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 5 GAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCG 64 ||||||||||| || ||| | | ||||||| ||| || ||| || ||||| || Sbjct 58636 GAGAGGAACCGTTGA-TTC-GCACAATTGGTCACCGCGCTTGGTTGAAAAGCCAGTGACG 58693 Query 65 CGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAA 123 |||| || || | ||||||||||| ||||| |||||||||||||||| | || |||| Sbjct 58694 CGAATCTTCCGTGCGCTGGATTATGACTGAATGCCTCTAAGTCAGAATTCGGGCTAGAA 58752 >seq15685 Length=407 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 280 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 337 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||| | ||| |||||| |||||||||||||||||||||||| Sbjct 338 GGCGCGAAGCTACTGTGCGCTATATTATGACTGAACGCCTCTAAGTCAGAATCC 391 >seq20 Length=193719 Score = 91.5 bits (100), Expect = 2e-16 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||| Sbjct 80596 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGG 80653 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| | ||||||| ||| ||||||||||||||||||||||| Sbjct 80654 GGCGCGAAGCTACCGTGCGCTGGATAATGAATGAACGCCTCTAAGTCAGAATCC 80707 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||| || ||| ||| || | ||| |||| ||| | Sbjct 131519 GTACGAGAGGAACCGCAGG-TTCGGACAAAT-GGTACATGTGCCTGCTCGACCGAGCAAT 131576 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | ||| |||| | || | |||||||| |||||||||||||||||||||||| Sbjct 131577 GGCACGACGCTATCGTCCGAGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 131630 >seq11979 Length=482 Score = 89.7 bits (98), Expect = 8e-16 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| ||| || ||| || |||| Sbjct 201 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCACCGCGCTTGGTTGAAAAGCCAGT 144 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||| || || | ||||||||||| ||||| |||||||||||||||||| || | Sbjct 143 GACGCGAATCTTCCGTGCGCTGGATTATGACTGAATGCCTCTAAGTCAGAATCCGGGCTA 84 Query 121 GAA 123 ||| Sbjct 83 GAA 81 >seq77 Length=66831 Score = 84.2 bits (92), Expect = 4e-14 Identities = 93/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| |||||||||| || || | | ||||||| | ||| || ||| || |||| Sbjct 19892 GTACAAGAGGAACCGTTGATTT--GCACAATTGGTCCTCGCGCTTGGTTGAAAAGCCAGT 19949 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||| ||||||| | ||||||| ||| ||||| |||||||||||||||||| || | Sbjct 19950 GGCGCAAAGCTACAGTGCGCTGGATAATGACTGAATGCCTCTAAGTCAGAATCCGGGCTA 20009 Query 121 GAA 123 ||| Sbjct 20010 GAA 20012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818939016704