Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq7 167 2e-36 seq2 158 1e-33 >seq7 Length=48366697 Score = 167 bits (184), Expect = 2e-36 Identities = 227/314 (72%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| | || | | || ||| |||||||| ||||| ||||| || |||| Sbjct 33024511 TGTTCCCGATCCAATACCCGCAGATCTGGGAGATGTACAAGAAGGCCGAAGCCTCTTTCT 33024452 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTT-ATCGAGC 61182 |||| | || || ||||| | ||| |||||| ||||||||| | | | ||| | Sbjct 33024451 GGACCGCCGAAGAAGTCGACCTCTCCCAAGACAATCGCGACTGGGAGAATCTCAACGA-C 33024393 Query 61183 GGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTC 61242 || || | ||| ||||| ||||| || | || ||||| ||||| || ||||| ||||| Sbjct 33024392 GGAGAGCGACACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCAGACGGAATCGTT 33024333 Query 61243 AATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 |||||| | || ||| | || |||||||| || ||||||||| ||| Sbjct 33024332 TTGGAGAATCTCGCCTCGCGGTTCATGTCCGACGTGCAAGTCTCCGAGGCGCGTGCCTTC 33024273 Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362 ||||| |||||||| || || |||||| ||||||| ||||||||||| | || |||| Sbjct 33024272 TACGGGTTCCAGATCGCGATTGAGAATATCCACTCAGAGATGTACAGCCTCCTGCTCGAC 33024213 Query 61363 ACGTACATCAGGGA 61376 |||||||||| ||| Sbjct 33024212 ACGTACATCAAGGA 33024199 >seq2 Length=52886895 Score = 158 bits (174), Expect = 1e-33 Identities = 391/582 (67%), Gaps = 16/582 (3%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| | || | | || ||| |||||||| || || ||||| ||||||| Sbjct 45187551 TGTTCCCAATCCACTACCCGCAGATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCT 45187492 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTT-TATCGAG- 61181 |||| | || || ||||| | ||| |||||| ||||||||| | |||| Sbjct 45187491 GGACCGCCGAAGAAGTCGACCTCTCCCAAGACACACGCGACTGGGAGAACAATCTCGACG 45187432 Query 61182 -CGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCG 61240 ||| || | || ||||| ||||| || | || ||||| ||||| || ||||| |||| Sbjct 45187431 ACGGAGAGCGCCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGGATCG 45187372 Query 61241 TCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTT 61300 | |||||| | || ||| | || ||||| || || |||||||| | Sbjct 45187371 TTCTCGAGAATCTCGCCACCCGGTTCATGTCCGACGTGCAGGTCTCCGAGGCGCGCGCCT 45187312 Query 61301 TCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCG 61360 ||||||| |||||||| || || |||||| |||||||||||||||||||| | | | | Sbjct 45187311 TCTACGGGTTCCAGATCGCGATCGAGAATATCCACTCGGAGATGTACAGTCTCTTGTTAG 45187252 Query 61361 ATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATAC 61420 |||||||||||| ||| ||| | || | | ||| || || ||||| || | Sbjct 45187251 ATACGTACATCAAGGACAACAAGGAGAGGGACCATCTCTTCCGCGCGATTGAGACCATCC 45187192 Query 61421 C-GGCG--GTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTA 61477 | ||| | ||| ||| || | |||||| | || |||||| | | | | | Sbjct 45187191 CTTGCGTCGCGAA---GAAGGCCCAATGGGCCATGAAGTGGATCGACGG---ATCTCAGA 45187138 Query 61478 CATTTGGTGA-ACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGG-ATC 61535 | || | || | ||| | |||| || || ||||| || | || ||| || | | Sbjct 45187137 CTTTCGCCGAGAGGATCG-TGGCGTTCGCTTGCGTCGAAGGGATCTTCTTCTCCGGTAGC 45187079 Query 61536 GTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAA 61595 | || | | ||||| ||| | ||||| ||||| || ||||| || || |||||| ||| Sbjct 45187078 TTCTG-CTCGATCTTCTGGCTCAAGAAGCGTGGGCTCATGCCGGGGCTCACCTTCTCCAA 45187020 Query 61596 TGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 ||| |||| || || ||||| ||| | || || || || || Sbjct 45187019 CGAGCTGATCTCGCGAGACGAAGGCCTTCACTGCGACTTCGC 45186978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397408655491040