Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq3 547 7e-151 seq5 334 8e-87 seq9 127 2e-24 seq4 122 1e-22 seq6538 113 5e-20 >seq3 Length=64984695 Score = 547 bits (606), Expect = 7e-151 Identities = 721/993 (73%), Gaps = 5/993 (1%) Strand=Plus/Minus Query 161545 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 161604 || || ||||||||||| || |||||||| || | || ||||| ||| ||| | ||| Sbjct 33666103 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 33666044 Query 161605 ATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCT 161664 | || |||||| | || || || || || | || |||||||| |||||| | ||| Sbjct 33666043 TTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCT 33665984 Query 161665 AGTTCCTATCTTGAGGGTGCAAATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGACGCT 161724 ||||||||| | || ||| |||||| | || || |||||| ||||| ||| | | Sbjct 33665983 AGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAATAGT 33665924 Query 161725 ATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTG 161783 | | |||||| || || || || ||||||||||| || ||||| ||||| | || Sbjct 33665923 TTAGCGCATTCT-TTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTG 33665865 Query 161784 GATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGG 161843 | ||| | || || || ||| |||||| || | |||||| |||||||| | || || Sbjct 33665864 GTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCACCACGGTGCTTTCGCATTAATAGG 33665805 Query 161844 ATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGCTA 161902 || ||| | ||||| |||||||||||||| ||| || | | || ||||| ||||| | Sbjct 33665804 TTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAA 33665746 Query 161903 TTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGAC 161962 | || ||||||||||| |||||||||||||| |||||||| || ||||| || || | Sbjct 33665745 TCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGGTC 33665686 Query 161963 AGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTTT 162022 | || |||||||| ||||| ||||| || || ||||| || | ||| | || | Sbjct 33665685 AATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCT 33665626 Query 162023 TCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTA 162082 | | ||||| || || |||||||| | || || || || |||||||| ||||| ||| Sbjct 33665625 TTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCTGGTG 33665566 Query 162083 TCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTACC 162142 | |||| | ||| || | | |||||||| |||| ||||| ||||| || | | Sbjct 33665565 TACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTG 33665506 Query 162143 AAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTT 162202 |||||||||| |||||||| ||| |||||| || | || |||| || || |||| Sbjct 33665505 AAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTT 33665446 Query 162203 ACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATA 162262 | || ||||| || || ||||| || |||||||| ||||| || |||||||| |||| Sbjct 33665445 ATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATA 33665386 Query 162263 AGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTA 162322 | |||||||| |||||||||||| | || || || || | ||| | |||| ||| || Sbjct 33665385 AACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTC 33665326 Query 162323 TCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTC 162382 | || | | || || ||| | || || ||||| || ||||| || || ||||| || | Sbjct 33665325 TTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCC 33665266 Query 162383 GTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAG 162442 |||||||||| ||||| |||||||| || ||||| || || ||||| || || || |||| Sbjct 33665265 GTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAG 33665206 Query 162443 GTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGG 162502 || |||| || ||| |||| | ||||| || ||||| ||| || |||||||||||| Sbjct 33665205 GTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 33665146 Query 162503 AAGTTCTGCCTAGAGGTAACGCACTGTGAATGG 162535 | ||||| || | || ||||| || | ||||| Sbjct 33665145 AGGTTCTACCACGTGGAAACGCTCT-TTAATGG 33665114 >seq5 Length=46902585 Score = 334 bits (370), Expect = 8e-87 Identities = 414/565 (73%), Gaps = 1/565 (0%) Strand=Plus/Plus Query 161971 TGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTTTTCCTACAA 162030 |||||||| ||||| ||||| || || ||||| || | ||| | || || | ||| Sbjct 22000812 TGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAA 22000871 Query 162031 GGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTATCTTGGGT 162090 || || || |||||||| | || || || || |||||||| ||||| ||| | |||| Sbjct 22000872 GGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGC 22000931 Query 162091 GGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTACCAAGATGGT 162150 | ||| || | | ||||||||| |||| ||||| ||||| || | | |||||||| Sbjct 22000932 GCGGCTCTGTTATGTGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGT 22000991 Query 162151 GAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTTACTCGATG 162210 || |||||||| ||| |||||| || | || |||| || || ||||| || ||| Sbjct 22000992 GATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATG 22001051 Query 162211 GTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGG 162270 || || || ||||| || |||||||| ||||| || |||||||| ||||| |||||| Sbjct 22001052 GTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGG 22001111 Query 162271 TTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATT 162330 || |||||||||||| | || || || || | ||| | |||| ||| || | || | Sbjct 22001112 TTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTA 22001171 Query 162331 ATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCG 162390 | || || ||| | || || ||||| || ||||| || || ||||| || ||||||||| Sbjct 22001172 GTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCG 22001231 Query 162391 GAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGT 162450 || ||||| |||||||| || ||||| || || ||||| || || || |||||| |||| Sbjct 22001232 GAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGC 22001291 Query 162451 GCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTG 162510 || ||| |||| | ||||| || ||||| ||| || ||||||||||||| ||||| Sbjct 22001292 GCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTA 22001351 Query 162511 CCTAGAGGTAACGCACTGTGAATGG 162535 || | || ||||| || | ||||| Sbjct 22001352 CCACGTGGAAACGCTCT-TTAATGG 22001375 >seq9 Length=54679868 Score = 127 bits (140), Expect = 2e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 160969 TATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGT 161028 || ||||| |||||||| || |||||||| | ||| || ||||| || ||||| ||| Sbjct 13977652 TACGTCCTCGACGCTGCGGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGT 13977593 Query 161029 GCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCT 161088 ||||||| | ||||| ||||| ||| | |||| |||| || || ||||| || | Sbjct 13977592 TCTTGCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGTTCTGTTGACCAGTCTGACCAGAGT 13977533 Query 161089 TTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACT 161148 ||||| |||||||| || ||| ||| ||||| || || || | |||||||| ||| Sbjct 13977532 TTCCTCGATGATGACCAGATTGCTGAAGGGTTTGTTCTCACTTGTGCGGCTTATCCAACT 13977473 Query 161149 TCTGATGTAACTATT 161163 |||||||| || ||| Sbjct 13977472 TCTGATGTTACCATT 13977458 >seq4 Length=53719093 Score = 122 bits (134), Expect = 1e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 160969 TATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGT 161028 || ||||| ||||||||||| ||||| || | ||| || ||||| || ||||||||| Sbjct 20464591 TACGTCCTAGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGT 20464650 Query 161029 GCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCT 161088 | ||||| | ||||| ||||| ||| | ||| |||| || || ||||| || | Sbjct 20464651 TCCTGCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 20464710 Query 161089 TTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACT 161148 ||||| |||||||| || ||| |||||| || || || || | |||||||| ||| Sbjct 20464711 TTCCTCGATGATGACCAGATTGCGGAAGGATTCGTTCTCACTTGTGCGGCTTATCCTACT 20464770 Query 161149 TCTGATGTAACTATT 161163 |||||||| || ||| Sbjct 20464771 TCTGATGTTACCATT 20464785 >seq6538 Length=695 Score = 113 bits (124), Expect = 5e-20 Identities = 194/279 (70%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 161545 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 161604 || || ||||||||||| || |||||||| || | || ||||| ||| || ||| Sbjct 418 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCAATTCCGCT 477 Query 161605 ATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCT 161664 | || |||||| | || || || || || | || |||||||| |||||| | ||| Sbjct 478 TTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCT 537 Query 161665 AGTTCCTATCTTGAGGGTGCAAATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGACGCT 161724 ||||||||| | || ||| |||||| | || || |||||| ||||| ||| | | Sbjct 538 AGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAAAAGT 597 Query 161725 ATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTG 161783 | | |||| | || || || || ||||||||||| || |||||||| ||| | || Sbjct 598 TTAGCGCATT-TTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGGGACTTCACTCGTTG 656 Query 161784 GATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCA 161822 | ||| | || || || ||| |||||| || || || Sbjct 657 GTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTTCA 695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551149343110800