Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq3 542 4e-149 seq5 343 2e-89 seq6538 91.5 2e-13 >seq3 Length=64984695 Score = 542 bits (600), Expect = 4e-149 Identities = 730/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Minus Query 189987 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 190046 ||||| || | ||||||||| | | || ||||| || ||||| ||||||||||| Sbjct 33666133 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 33666074 Query 190047 TTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 190106 || | || ||||| ||| ||| |||| | || || ||| | || || || || ||| Sbjct 33666073 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 33666014 Query 190107 GCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTTTCTT 190166 | || ||||| || || ||| | || ||| || | || ||| |||||| | Sbjct 33666013 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 33665954 Query 190167 ACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 190226 || || || || || || |||||| || | | | |||||| | | |||| |||||| Sbjct 33665953 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 33665894 Query 190227 CCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTG 190286 |||||| | ||||| ||||| | ||| ||| | || || || ||||||||||| Sbjct 33665893 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 33665834 Query 190287 GCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG- 190345 || | |||||| |||||||| |||| || || ||| | ||||| |||||||| || || Sbjct 33665833 GCTCACCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 33665774 Query 190346 TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGT 190405 ||| || | | || ||||| ||||| || || ||||||||||| || ||||||||||| Sbjct 33665773 TCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 33665715 Query 190406 TAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGG 190465 | |||||||| || || || || |||||||| |||||||||| ||||| || || Sbjct 33665714 TTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 33665655 Query 190466 TGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAA 190525 ||| || || || || || ||| ||||||| || || || || ||||| ||||| |||| Sbjct 33665654 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 33665595 Query 190526 CCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCA 190585 ||| || || |||||||| || || ||| | ||||| | || || | | || || || Sbjct 33665594 CCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCA 33665535 Query 190586 TGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGC 190645 ||||| |||||||| |||||||| | |||||||||||| ||||| || || || Sbjct 33665534 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 33665475 Query 190646 ATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTC 190705 || || | || |||| ||||| || ||||| |||||||| || ||||| || ||||| Sbjct 33665474 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 33665415 Query 190706 TCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGT 190765 ||||||||||| ||||| || ||||| | ||||| |||||||||||| | ||||| Sbjct 33665414 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 33665355 Query 190766 TCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 190825 || || | ||| | |||| | | | || | | ||||| ||| | ||||| || Sbjct 33665354 ACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACG 33665295 Query 190826 TGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTT 190885 ||| |||||||| || ||||| || ||| | ||||| |||||||| || || |||||||| Sbjct 33665294 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 33665235 Query 190886 TTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATCA 190945 || || |||||||| ||||| || |||||| |||| | ||| |||| || ||||| Sbjct 33665234 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCA 33665175 Query 190946 ACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 || ||||| || || |||| || || || || | ||| | || |||||||| Sbjct 33665174 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33665121 >seq5 Length=46902585 Score = 343 bits (380), Expect = 2e-89 Identities = 421/575 (73%), Gaps = 0/575 (0%) Strand=Plus/Plus Query 190425 CCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCAGCGATCTTCCGC 190484 || || |||||||| |||||||||| ||||| || ||||| || || || || || Sbjct 22000794 CCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGA 22000853 Query 190485 TTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCCACATGATGGGT 190544 ||| ||||||| || || || || ||||| ||||| ||||||| || || |||||||| Sbjct 22000854 TTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGA 22000913 Query 190545 GTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGTGTGACTGTAGAGAAT 190604 || || ||| | ||||| | || || | | || || ||||||| |||||||| ||| Sbjct 22000914 GTCGCTGGTGTACTGGGCGCGGCTCTGTTATGTGCTATTCATGGTGCTACTGTAGAAAAT 22000973 Query 190605 ACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGACTCTACACAAGAG 190664 ||||| | |||||||||||| ||||| || || || || || | || |||| Sbjct 22000974 ACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCC 22001033 Query 190665 GAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTTGGTGTTGCG 190724 ||||| || ||||| |||||||| || ||||| || ||||| ||||||||||| ||||| Sbjct 22001034 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCT 22001093 Query 190725 TTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTGTGG 190784 || ||||| | ||||| |||||||||||| | ||||| || || | ||| | ||| Sbjct 22001094 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGG 22001153 Query 190785 ACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCC 190844 | | | | || | | ||||| ||| | ||||| ||||| |||||||| || ||| Sbjct 22001154 ATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCC 22001213 Query 190845 CAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTTTACACAAAAAATATACTT 190904 || || ||| | ||||| |||||||| || || |||||||| || || |||||||| ||| Sbjct 22001214 CAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTT 22001273 Query 190905 TTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATCAACCCCATGAGAATTTTGTA 190964 || || |||||| |||| | ||| |||| || ||||| || ||||| || || || Sbjct 22001274 TTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATA 22001333 Query 190965 TTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 || || || || || | ||| | || |||||||| Sbjct 22001334 TTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 22001368 >seq6538 Length=695 Score = 91.5 bits (100), Expect = 2e-13 Identities = 205/308 (67%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 189987 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 190046 ||||| || | ||||||||| | | || ||||| || ||||| ||||||||||| Sbjct 388 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 447 Query 190047 TTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 190106 || | || ||||| ||| || ||| | || || ||| | || || || || ||| Sbjct 448 CTATTGCTCTTTCCTTGTGCCAATTCCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 507 Query 190107 GCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTTTCTT 190166 | || ||||| || || ||| | || ||| || | || ||| |||||| | Sbjct 508 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 567 Query 190167 ACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 190226 || || || || || || |||||| | | | | |||| | | | |||| |||||| Sbjct 568 ACCGCTGCAGTTTCTACTCCTGCTAAAAGTTTAGCGCATTTTTTGTTGTTACTGTGGGGT 627 Query 190227 CCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTG 190286 |||||| | ||||| || ||| | ||| ||| | || || || ||||||||||| Sbjct 628 CCTGAAGCACAAGGGGACTTCACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 687 Query 190287 GCGCTCCA 190294 || || || Sbjct 688 GCTCTTCA 695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633819345564000